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Flat files reader uses simple text files to build a model. You can check some examples in CaseStudy page.

It uses 4 files 3 of which are mandatory.

  • Reactions file
  • Metabolites File
  • Matrix File
  • Gene Rules File (not mandatory)


This reader also needs aditional configurations in order to read the files. So after selecting the files and pressing "Next" the following panel of configurations will appear:


The reader needs to know where the index of the matrix starts (0 or 1) and if the matrix is Sparse or dense.
Finally it also needs to know the separators for each file in order to correctly read them.

Back to OptFlux Readers