From Optflux
Jump to: navigation, search
Line 12: Line 12:
 
**Model: send a model from OptFlux to model-seed
 
**Model: send a model from OptFlux to model-seed
 
**Media: send a media from OptFlux to model-seed
 
**Media: send a media from OptFlux to model-seed
 
+
</br>
 
*Merge Biochemistry: merge two biochemistries in local model-seed.
 
*Merge Biochemistry: merge two biochemistries in local model-seed.
 
*Import from server to local model-seed
 
*Import from server to local model-seed
Line 24: Line 24:
 
***Reaction KOs
 
***Reaction KOs
  
 
*[[OptFlux3:CORE:NewProject|New project]]
 
**[[CORE:Readers:Drains | Drains Definition]]
 
**[[OptFlux Readers]]
 
***[[SBML Reader]]
 
***[[OptFlux3:MR | OptFlux Repository]]
 
***[[Flat Files Reader]]
 
***[[Table format Reader]]
 
***[[Cell Designer Reader]]
 
*[[OptFlux3:CORE:ImportProject | Import Project]]
 
*[[OptFlux3:SMP |Model Simplification]]
 
  
 
== Technical documentation for developers  ==
 
== Technical documentation for developers  ==
  
 
*[[Create a new plugin using the plugin builder]]
 
*[[Create a new plugin using the plugin builder]]

Revision as of 14:02, 25 March 2013


Model-seed plug-in operations

  • Login: operation to login in the local model-seed
  • Logout: operation to logout
  • Pull:
    • Model: import a model from model-seed to OptFlux
    • Media: import a media from model-seed to OptFlux
  • Commit:
    • Model: send a model from OptFlux to model-seed
    • Media: send a media from OptFlux to model-seed

</br>

  • Merge Biochemistry: merge two biochemistries in local model-seed.
  • Import from server to local model-seed
    • Biochemistry: import biochemistry
    • Mappings: import mappings
    • Genome: import annotation
  • Model
    • Build: build a model in local model-seed
    • FBA
      • Wild Type
      • Reaction KOs


Technical documentation for developers