Difference between revisions of "MS-howto"

Revision as of 18:15, 25 March 2013

The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.

Model-seed plug-in operations

• Login: operation to login in the local model-seed
• Logout: operation to logout
• Pull (from MSeed to OptFlux):
  • Model: import a model from model-seed to OptFlux
  • Media: import a media from model-seed to OptFlux
• Commit (from OptFlux to MSeed):
  • Model: send a model from OptFlux to model-seed
  • Media: send a media from OptFlux to model-seed
• Merge Biochemistry: merge two biochemistries in local model-seed
• Import from server to local model-seed:
  • Biochemistry: import biochemistry
  • Mappings: import mappings
  • Genome: import annotation
• Model
  • Build: build a model in local model-seed
  • FBA
    • Wild Type
    • Reaction KO
    • Gene KO

Technical documentation for developers

• Create a new plugin using the plugin builder (pdf)