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(Model-seed plug-in operations)
 
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{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}}
 
{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}}
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The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br />
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If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.<br />
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In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.
  
 
== Model-seed plug-in operations ==
 
== Model-seed plug-in operations ==
*[[OptFlux3:CORE:NewProject|New project]]
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[[File:Menu-ms.png]]
**[[CORE:Readers:Drains | Drains Definition]]
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*[[ms-loginout | Login: operation to login in the local model-seed]]
**[[OptFlux Readers]]
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*[[ms-loginout | Logout: operation to logout]]
***[[SBML Reader]]
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*[[ms-pull | Pull (from MSeed to OptFlux):]]
***[[OptFlux3:MR | OptFlux Repository]]
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**[[ms-pull#Pull_model | Model: import a model from model-seed to OptFlux]]
***[[Flat Files Reader]]
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**[[ms-pull#Pull_media | Media: import a media from model-seed to OptFlux]]
***[[Table format Reader]]
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* [[ms-commit | Commit (from OptFlux to MSeed):]]
***[[Cell Designer Reader]]
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**[[ms-commit#Commit_model |Model: send a model from OptFlux to model-seed]]
*[[OptFlux3:CORE:ImportProject | Import Project]]
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**[[ms-commit#Commit_media |Media: send a media from OptFlux to model-seed]]
*[[OptFlux3:SMP |Model Simplification]]
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*[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]]
 
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*[[ms-import | Import from server to local model-seed:]]
=== Technical documentation for developers  ===
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**[[ms-import#Import_biochemistry | Biochemistry: import biochemistry]]
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**[[ms-import#Import_mappings | Mappings: import mappings ]]
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**[[ms-import#Import_genome | Genome: import annotation]]
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*[[ms-model | Model]]
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**[[ms-model | Build: build a model in local model-seed]]
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**[[ms-fba | FBA]]
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***[[ms-fba#Wild-type_FBA | Wild Type]]
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***[[ms-fba#Reaction_KO_FBA | Reaction KO]]
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***[[ms-fba#Gene_KO_FBA | Gene KO]]
  
*[[Create a new plugin using the plugin builder]]
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== Technical documentation for developers  ==
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*[[Create a new plugin using the plugin builder (pdf)]]

Latest revision as of 18:18, 25 March 2013


The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.

Model-seed plug-in operations[edit]

Menu-ms.png

Technical documentation for developers[edit]