From Optflux
Simao.soares (talk | contribs) |
Simao.soares (talk | contribs) (→Model-seed plug-in operations) |
||
| (28 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}} | {{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}} | ||
| − | The Model-seed operations are located in the menu | + | The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> |
| − | + | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.<br /> | |
| − | If the MS plug-in is not yet loaded in OptFlux, just go to -- | + | In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed. |
== Model-seed plug-in operations == | == Model-seed plug-in operations == | ||
| − | *Login: operation to login in the local model-seed | + | [[File:Menu-ms.png]] |
| − | * Logout: operation to logout | + | *[[ms-loginout | Login: operation to login in the local model-seed]] |
| − | * Pull: | + | *[[ms-loginout | Logout: operation to logout]] |
| − | ** Model: import a model from model-seed to OptFlux | + | *[[ms-pull | Pull (from MSeed to OptFlux):]] |
| − | ** Media: import a media from model-seed to OptFlux | + | **[[ms-pull#Pull_model | Model: import a model from model-seed to OptFlux]] |
| − | * Commit: | + | **[[ms-pull#Pull_media | Media: import a media from model-seed to OptFlux]] |
| − | **Model: send a model from OptFlux to model-seed | + | * [[ms-commit | Commit (from OptFlux to MSeed):]] |
| − | **Media: send a media from OptFlux to model-seed | + | **[[ms-commit#Commit_model |Model: send a model from OptFlux to model-seed]] |
| − | *Merge Biochemistry: merge two biochemistries in local model-seed | + | **[[ms-commit#Commit_media |Media: send a media from OptFlux to model-seed]] |
| − | *Import from server to local model-seed: | + | *[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]] |
| − | **Biochemistry: import biochemistry | + | *[[ms-import | Import from server to local model-seed:]] |
| − | **Mappings: import mappings | + | **[[ms-import#Import_biochemistry | Biochemistry: import biochemistry]] |
| − | **Genome: import annotation | + | **[[ms-import#Import_mappings | Mappings: import mappings ]] |
| − | *Model | + | **[[ms-import#Import_genome | Genome: import annotation]] |
| − | **Build: build a model in local model-seed | + | *[[ms-model | Model]] |
| − | **FBA | + | **[[ms-model | Build: build a model in local model-seed]] |
| − | ***Wild Type | + | **[[ms-fba | FBA]] |
| − | ***Reaction KO | + | ***[[ms-fba#Wild-type_FBA | Wild Type]] |
| − | ***Gene KO | + | ***[[ms-fba#Reaction_KO_FBA | Reaction KO]] |
| − | + | ***[[ms-fba#Gene_KO_FBA | Gene KO]] | |
== Technical documentation for developers == | == Technical documentation for developers == | ||
*[[Create a new plugin using the plugin builder (pdf)]] | *[[Create a new plugin using the plugin builder (pdf)]] | ||
Latest revision as of 18:18, 25 March 2013
The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.
Model-seed plug-in operations[edit]
- Login: operation to login in the local model-seed
- Logout: operation to logout
- Pull (from MSeed to OptFlux):
- Commit (from OptFlux to MSeed):
- Merge Biochemistry: merge two biochemistries in local model-seed
- Import from server to local model-seed:
- Model