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Simao.soares (talk | contribs) (→Model-seed plug-in operations) |
Simao.soares (talk | contribs) (→Model-seed plug-in operations) |
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The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> | The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> | ||
| − | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in. | + | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.<br /> |
| + | In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed. | ||
== Model-seed plug-in operations == | == Model-seed plug-in operations == | ||
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**[[ms-import#Import_mappings | Mappings: import mappings ]] | **[[ms-import#Import_mappings | Mappings: import mappings ]] | ||
**[[ms-import#Import_genome | Genome: import annotation]] | **[[ms-import#Import_genome | Genome: import annotation]] | ||
| − | *Model | + | *[[ms-model | Model]] |
| − | **Build: build a model in local model-seed | + | **[[ms-model | Build: build a model in local model-seed]] |
| − | **[[ms-fba | + | **[[ms-fba | FBA]] |
| − | ***[[ms-fba | Wild Type]] | + | ***[[ms-fba#Wild-type_FBA | Wild Type]] |
***[[ms-fba#Reaction_KO_FBA | Reaction KO]] | ***[[ms-fba#Reaction_KO_FBA | Reaction KO]] | ||
***[[ms-fba#Gene_KO_FBA | Gene KO]] | ***[[ms-fba#Gene_KO_FBA | Gene KO]] | ||
Latest revision as of 18:18, 25 March 2013
The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.
Model-seed plug-in operations[edit]
- Login: operation to login in the local model-seed
- Logout: operation to logout
- Pull (from MSeed to OptFlux):
- Commit (from OptFlux to MSeed):
- Merge Biochemistry: merge two biochemistries in local model-seed
- Import from server to local model-seed:
- Model