Difference between revisions of "MS-howto"

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(Model-seed plug-in operations)
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**[[ms-import#Import_mappings | Mappings: import mappings ]]
 
**[[ms-import#Import_mappings | Mappings: import mappings ]]
 
**[[ms-import#Import_genome | Genome: import annotation]]
 
**[[ms-import#Import_genome | Genome: import annotation]]
*Model
+
*[[ms-model | Model]]
**Build: build a model in local model-seed
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**[[ms-model | Build: build a model in local model-seed]]
 
**[[ms-fba#Wild-type_FBA | FBA]]
 
**[[ms-fba#Wild-type_FBA | FBA]]
 
***[[ms-fba | Wild Type]]
 
***[[ms-fba | Wild Type]]

Revision as of 18:16, 25 March 2013


The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.

Model-seed plug-in operations

Menu-ms.png

Technical documentation for developers