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[[File:Operations-model-fba.png]] | [[File:Operations-model-fba.png]] | ||
| + | The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu MSeed > Operations > Model > FBA. | ||
==Wild-type FBA == | ==Wild-type FBA == | ||
| + | To do a Wild-type simulation go to MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemisty and media to be used in the simulation. | ||
| + | A simulation result will be created in the OptFlux workspace. | ||
[[File:Model-fba-wt.png]] | [[File:Model-fba-wt.png]] | ||
==Reaction KO FBA== | ==Reaction KO FBA== | ||
| + | To perform a reaction knock-out simulation go to MSeed > Operations > Model > FBA > Reaction KO and select: | ||
| + | *the local model-seed | ||
| + | *the biochemisty | ||
| + | *media | ||
| + | *reaction to be turned off in the simulation.<br /> | ||
| + | A simulation result will be created in the OptFlux workspace. | ||
[[File:Model-fba-reactions.png]] | [[File:Model-fba-reactions.png]] | ||
==Gene KO FBA== | ==Gene KO FBA== | ||
N/A | N/A | ||
Revision as of 18:07, 25 March 2013
The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu MSeed > Operations > Model > FBA.
Wild-type FBA
To do a Wild-type simulation go to MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemisty and media to be used in the simulation.
A simulation result will be created in the OptFlux workspace.
Reaction KO FBA
To perform a reaction knock-out simulation go to MSeed > Operations > Model > FBA > Reaction KO and select:
- the local model-seed
- the biochemisty
- media
- reaction to be turned off in the simulation.
A simulation result will be created in the OptFlux workspace.
Gene KO FBA
N/A