Ms-fba

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Revision as of 18:07, 25 March 2013 by Simao.soares (talk | contribs) (Reaction KO FBA)
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Operations-model-fba.png The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu MSeed > Operations > Model > FBA.

Wild-type FBA

To do a Wild-type simulation go to MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemisty and media to be used in the simulation. A simulation result will be created in the OptFlux workspace. Model-fba-wt.png

Reaction KO FBA

To perform a reaction knock-out simulation go to MSeed > Operations > Model > FBA > Reaction KO and select:

  • the local model-seed
  • the biochemisty
  • media
  • reaction to be turned off in the simulation.

A simulation result will be created in the OptFlux workspace.
Model-fba-reactions.png

Gene KO FBA

N/A