From Optflux
Simao.soares (talk | contribs) |
Simao.soares (talk | contribs) (→Reaction KO FBA) |
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*the biochemisty | *the biochemisty | ||
*media | *media | ||
| − | * | + | *reactions to be turned off in the simulation.<br /> |
A simulation result will be created in the OptFlux workspace.<br /> | A simulation result will be created in the OptFlux workspace.<br /> | ||
[[File:Model-fba-reactions.png]] | [[File:Model-fba-reactions.png]] | ||
Revision as of 18:08, 25 March 2013
The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu MSeed > Operations > Model > FBA.
Wild-type FBA
To do a Wild-type simulation go to MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemisty and media to be used in the simulation.
A simulation result will be created in the OptFlux workspace.
Reaction KO FBA
To perform a reaction knock-out simulation go to MSeed > Operations > Model > FBA > Reaction KO and select:
- the local model-seed
- the biochemisty
- media
- reactions to be turned off in the simulation.
A simulation result will be created in the OptFlux workspace.
Gene KO FBA
N/A