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[[File:Operations-model-fba.png]]<br /> | [[File:Operations-model-fba.png]]<br /> | ||
| − | The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu MSeed > Operations > Model > FBA. | + | The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu Plugin Builder > MSeed > Operations > Model > FBA. |
==Wild-type FBA == | ==Wild-type FBA == | ||
| − | To do a Wild-type simulation go to MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the | + | To do a Wild-type simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemistry and media to be used in the simulation.<br /> |
A simulation result will be created in the OptFlux workspace.<br /> | A simulation result will be created in the OptFlux workspace.<br /> | ||
[[File:Model-fba-wt.png]] | [[File:Model-fba-wt.png]] | ||
==Reaction KO FBA== | ==Reaction KO FBA== | ||
| − | To perform a reaction knock-out simulation go to MSeed > Operations > Model > FBA > Reaction KO and select: | + | To perform a reaction knock-out simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Reaction KO and select: |
*the local model-seed | *the local model-seed | ||
*the biochemisty | *the biochemisty | ||
Latest revision as of 18:33, 25 March 2013
The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu Plugin Builder > MSeed > Operations > Model > FBA.
Wild-type FBA[edit]
To do a Wild-type simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemistry and media to be used in the simulation.
A simulation result will be created in the OptFlux workspace.
Reaction KO FBA[edit]
To perform a reaction knock-out simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Reaction KO and select:
- the local model-seed
- the biochemisty
- media
- reactions to be turned off in the simulation.
A simulation result will be created in the OptFlux workspace.
Gene KO FBA[edit]
N/A