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(Import genome)
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== Import biochemistry ==
 
== Import biochemistry ==
To import a biochemistry select the option MSeed -> Import -> Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.<br />  
+
To import a biochemistry select the option MSeed > Import > Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.<br />  
 
[[File:Import-biochem.png]]
 
[[File:Import-biochem.png]]
  
 
== Import mappings ==
 
== Import mappings ==
To import a mapping select the option MSeed -> Import -> Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.<br />  
+
To import a mapping select the option MSeed > Import > Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.<br />  
  
 
[[File:Import-mappings.png]]
 
[[File:Import-mappings.png]]
  
 
== Import genome ==
 
== Import genome ==
To import a genome select the option MSeed -> Import -> Mappings:
+
To import a genome select the option MSeed > Import > Mappings:
 
*choose one of the available genomes in The Seed
 
*choose one of the available genomes in The Seed
 
*a name for the local annotation
 
*a name for the local annotation

Revision as of 16:33, 25 March 2013


Operations-import.png

The Model-seed works in two levels, a local server and The seed server, it is possible to import to the local model-seed:

  • biochemistry data
  • genome annotations
  • mappings

And use these data elements in local operations.

Import biochemistry

To import a biochemistry select the option MSeed > Import > Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.
Import-biochem.png

Import mappings

To import a mapping select the option MSeed > Import > Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.

Import-mappings.png

Import genome

To import a genome select the option MSeed > Import > Mappings:

  • choose one of the available genomes in The Seed
  • a name for the local annotation
  • the mapping available locally to be used.

A new genome annotation will be created in the local model-seed with the inserted name.
Import-genome.png