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(Import biochemistry)
 
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{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}}
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{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: import}}
  
 
[[File:Operations-import.png]]
 
[[File:Operations-import.png]]
  
The Model-seed works in two levels, a local server and The seed server, it is possible to import to the local model-seed biochemistry data, genome annotations and mappings, to then use these data elements in local operations.
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The Model-seed works in two levels, a local server and The seed server, it is possible to import to the local model-seed:
 +
*biochemistry data
 +
*genome annotations
 +
*mappings  
 +
And use these data elements in local operations.
  
 
== Import biochemistry ==
 
== Import biochemistry ==
To import a biochemistry select the option MSeed -> Import -> Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.
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To import a biochemistry select the option Plugin Builder > MSeed > Import > Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.<br />
 +
[[File:Import-biochem.png]]
  
 
== Import mappings ==
 
== Import mappings ==
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To import a mapping select the option Plugin Builder > MSeed > Import > Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.<br />
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 +
[[File:Import-mappings.png]]
  
 
== Import genome ==
 
== Import genome ==
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To import a genome select the option Plugin Builder > MSeed > Import > Mappings:
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*choose one of the available genomes in The Seed
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*a name for the local annotation
 +
*the mapping available locally to be used.
 +
A new genome annotation will be created in the local model-seed with the inserted name.<br />
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[[File:Import-genome.png]]
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<br />
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<br />[[MS-howto|''Return to the Model-seed How-to Index'']]

Latest revision as of 18:34, 25 March 2013


Operations-import.png

The Model-seed works in two levels, a local server and The seed server, it is possible to import to the local model-seed:

  • biochemistry data
  • genome annotations
  • mappings

And use these data elements in local operations.

Import biochemistry[edit]

To import a biochemistry select the option Plugin Builder > MSeed > Import > Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.
Import-biochem.png

Import mappings[edit]

To import a mapping select the option Plugin Builder > MSeed > Import > Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.

Import-mappings.png

Import genome[edit]

To import a genome select the option Plugin Builder > MSeed > Import > Mappings:

  • choose one of the available genomes in The Seed
  • a name for the local annotation
  • the mapping available locally to be used.

A new genome annotation will be created in the local model-seed with the inserted name.
Import-genome.png



Return to the Model-seed How-to Index