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{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: model}}
 
{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: model}}
 
[[File:Operations-model.png]]<br />
 
[[File:Operations-model.png]]<br />
The operations to create a new model and to perform FBA simulations using Model-seed and the local model-seed data are grouped in the menu MSeed > Operations > Model.
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The operations to create a new model and to perform FBA simulations using Model-seed and the local model-seed data are grouped in the menu Plugin Builder > MSeed > Operations > Model.
 
==Build a model==
 
==Build a model==
To build a model from an annotation in the local model-seed go to the menu  MSeed > Operations > Model > build. The user needs to select the annotation (from local model-seed) to be used in the model reconstruction process and the name for the new model. A new model will be added to the local model-seed with the defined name. <br />
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To build a model from an annotation in the local model-seed go to the menu  Plugin Builder > MSeed > Operations > Model > build. The user needs to select the annotation (from local model-seed) to be used in the model reconstruction process and the name for the new model. A new model will be added to the local model-seed with the defined name. <br />
 
[[File:Model-build.png]]
 
[[File:Model-build.png]]
 
==[[Ms-fba | Model FBA]]==
 
==[[Ms-fba | Model FBA]]==

Latest revision as of 18:32, 25 March 2013

Operations-model.png
The operations to create a new model and to perform FBA simulations using Model-seed and the local model-seed data are grouped in the menu Plugin Builder > MSeed > Operations > Model.

Build a model[edit]

To build a model from an annotation in the local model-seed go to the menu Plugin Builder > MSeed > Operations > Model > build. The user needs to select the annotation (from local model-seed) to be used in the model reconstruction process and the name for the new model. A new model will be added to the local model-seed with the defined name.
Model-build.png

Model FBA[edit]

Quick how-to to perform Wild-type and Reaction KO simulations.



Return to the Model-seed How-to Index