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(Installation)
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=Installation=
 
=Installation=
  
After install the OptFlux, the Reg4OptFlux plugin can be installed through the repository manager present in OptFlux.
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After install the OptFlux, the COBRA4OptFlux plugin can be installed through the repository manager present in OptFlux.
 
*You can access the '''Repository''' option under the '''Help -> Repository Manager''' menu.<br>
 
*You can access the '''Repository''' option under the '''Help -> Repository Manager''' menu.<br>
  

Revision as of 15:31, 4 March 2016

Installation

After install the OptFlux, the COBRA4OptFlux plugin can be installed through the repository manager present in OptFlux.

  • You can access the Repository option under the Help -> Repository Manager menu.

Installcobraplugin.png

  • After accessing to the Repository Manager click over the Cobra for OptFlux (version x) and perform the installation by clicking on Install - Version x.x.x).
  • Click on Restart button.

Configuration

After install the Cobra4OptFlux plugin, some configurations must be performed.

  • You can access the Preferences option under the Help -> Preferences menu.

Cobrapreferenceswindow.png

  • After accessing the Preferences click over Matlab tab.
  • Here you must select the MATLAB Executable path. This path is mandatory to perform the MATLAB operations.
  • The Gurobi folder is optional but most of the available COBRA formulations use this solver thus this preference is highly recommendable.
  • The Show MATLAB Console Only is optional and when disable the MATLAB will be opened as a full application.
  • Click on Restart button if it is enable - Only happens when Gurobi Folder is added/changed.

And that's all!! You can press OK and if all is well defined the COBRA plugin for OptFlux can be used in full.