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(Installation)
 
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=Configuration=
 
=Configuration=
  
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<b><i>This plugin only works if the machine has the MATLAB application installed with the COBRA package.</i></b><br>
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* Follow this link to [https://opencobra.github.io/cobratoolbox/ install COBRA toolbox in MATLAB]
 
After install the Cobra4OptFlux plugin, some configurations must be performed.
 
After install the Cobra4OptFlux plugin, some configurations must be performed.
 
*You can access the '''Preferences''' option under the '''Help -> Preferences''' menu.<br>
 
*You can access the '''Preferences''' option under the '''Help -> Preferences''' menu.<br>

Latest revision as of 15:38, 4 March 2016

Installation[edit]

After install the OptFlux, the COBRA4OptFlux plugin can be installed through the repository manager present in OptFlux.

  • You can access the Repository option under the Help -> Repository Manager menu.

Installcobraplugin.png

  • After accessing to the Repository Manager click over the Cobra for OptFlux (version x) and perform the installation by clicking on Install - Version x.x.x).
  • Click on Restart button.

Configuration[edit]

This plugin only works if the machine has the MATLAB application installed with the COBRA package.

After install the Cobra4OptFlux plugin, some configurations must be performed.

  • You can access the Preferences option under the Help -> Preferences menu.

Cobrapreferenceswindow.png

  • After accessing the Preferences click over Matlab tab.
  • Here you must select the MATLAB Executable path. This path is mandatory to perform the MATLAB operations.
  • The Gurobi folder is optional but most of the available COBRA formulations use this solver thus this preference is highly recommendable.
  • The Show MATLAB Console Only is optional and when disable the MATLAB will be opened as a full application.
  • Click on Restart button if it is enable - Only happens when Gurobi Folder is added/changed.

And that's all!! You can press OK and if all is well defined the COBRA plugin for OptFlux can be used in full.