Installation

After install the OptFlux, the COBRA4OptFlux plugin can be installed through the repository manager present in OptFlux.

You can access the Repository option under the Help -> Repository Manager menu.

After accessing to the Repository Manager click over the Cobra for OptFlux (version x) and perform the installation by clicking on Install - Version x.x.x).
Click on Restart button.

Configuration

After install the Cobra4OptFlux plugin, some configurations must be performed.

You can access the Preferences option under the Help -> Preferences menu.

After accessing the Preferences click over Matlab tab.
Here you must select the MATLAB Executable path. This path is mandatory to perform the MATLAB operations.
The Gurobi folder is optional but most of the available COBRA formulations use this solver thus this preference is highly recommendable.
The Show MATLAB Console Only is optional and when disable the MATLAB will be opened as a full application.
Click on Restart button if it is enable - Only happens when Gurobi Folder is added/changed.

And that's all!! You can press OK and if all is well defined the COBRA plugin for OptFlux can be used in full.