Plugins

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EFM4OptFlux - Elementary Flux Modes Analysis

This plugin is provided in the current version of OptFlux 2.

Documentation regarding this plugin can be found here!

MFA4Optflux - Metabolic Flux Analysis

This plugin is provided in the current version of OptFlux 2.

Documentation regarding this plugin can be found here!

OptKnock4OptFlux - OptKnock Optimization

This plugin is provided in the current version of OptFlux 2.

Documentation regarding this plugin can be found here!

TNA4OptFlux - Network Topology Analysis

This plugin is under a different release of OptFlux 2. Please download it here (zip)

Documentation regarding this plugin can be found here!

RegulatoryTool4OptFlux

This plugin is available on a new version of OptFlux 2! Download it here!

Documentation regarding this plugin can be found here!

OverUnderExpression4OptFlux

This plugin is under the current release candidate (v2.3 RC1) ! Please download it here (exe - auto installer)

Documentation regarding this plugin can be found here!

AddReactions4OptFlux

This plugin is under the current release candidate (v2.4) ! Please download it here (exe - auto installer)

Documentation regarding this plugin can be found here!

EMOStrain

EMOStrain is now the default Optimization plug-in and ships out-of-the-box with OptFlux 3 (Menu: Optimization->Evolutionary).

Documentation regarding strain optimization in OptFlux can be found here