From Optflux
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* To start, you will need a valid CellDesigner SBML File loaded in OptFlux (see how to [[How_to_create_a_new_model/project_from_SBML | here]]). Remember to '''select CellDesigner SBML'''. You can use any model/format to calculate the EFMs, but in order to export to CellDesigner SBML, you will need a valid CellDesigner SBML file in the beginning. | * To start, you will need a valid CellDesigner SBML File loaded in OptFlux (see how to [[How_to_create_a_new_model/project_from_SBML | here]]). Remember to '''select CellDesigner SBML'''. You can use any model/format to calculate the EFMs, but in order to export to CellDesigner SBML, you will need a valid CellDesigner SBML file in the beginning. | ||
| − | =Computing EFMs= | + | ==Computing EFMs== |
* 1 - Start by accessing the menu '''Plugins->Elementary Modes->Compute Elementary Modes'''. | * 1 - Start by accessing the menu '''Plugins->Elementary Modes->Compute Elementary Modes'''. | ||
Revision as of 18:28, 26 February 2010
Example file
You can download it here -> Stelling_toy.xml (right-click + save link as...)
Brief tutorial
This brief tutorial will help you to begin working with EFM4OptFlux.
- To start, you will need a valid CellDesigner SBML File loaded in OptFlux (see how to here). Remember to select CellDesigner SBML. You can use any model/format to calculate the EFMs, but in order to export to CellDesigner SBML, you will need a valid CellDesigner SBML file in the beginning.
Computing EFMs
- 1 - Start by accessing the menu Plugins->Elementary Modes->Compute Elementary Modes.