From Optflux
Revision as of 18:32, 26 February 2010 by Admin (talk | contribs) (→‎Brief tutorial)
Jump to: navigation, search

Example file

You can download it here -> Stelling_toy.xml (right-click + save link as...)

Brief tutorial

This brief tutorial will help you to begin working with EFM4OptFlux.

  • To start, you will need a valid CellDesigner SBML File loaded in OptFlux (see how to here). Remember to select CellDesigner SBML. You can use any model/format to calculate the EFMs, but in order to export to CellDesigner SBML, you will need a valid CellDesigner SBML file in the beginning.

Computing EFMs

  • 1 - Start by accessing the menu Plugins->Elementary Modes->Compute Elementary Modes.

Efm menu.png

  • 2 - The following dialog will be displayed. Arithmetics is constrained to BIGINT. We recommend using the default options, but feel free to explore...

Efm dialog.png

  • 3 - After execution, a new datatype will be placed in the clipboard, under the simulation list -> elementary modes'. Pressing it will launch a default viewer, summarizing the computation process.

Efm raw.png

Retrieved from "http://www.optflux.org/wiki/index.php?title=EFM4OptFlux&oldid=430"