Editing HowTos

*[[How to create a new model/project from SBML]]

*[[How to create a new model/project from text files]]

*[[How to save and load projects]]

*[[How to export models to SBML]]

*[[How to export models to Flat Files]]

*[[Interaction with Cell Designer]]

            *[[How to load a CD model for visualization]]
            *[[How to export a model to CD SBML (with results)]]
            *[[How to do a simulation overlap with a CD model]]


*[[How to do a wild type simulation]]

*[[How to do a mutant simulation]]

            *[[Reaction deletion]]
            *[[Gene knockout]]

*[[Environmental conditions]]

*Flux Variability Analysis

            *[[How to Calculate Flux Limits]]
            *[[How to generate a Flux Variability Graph]]

*Essential genes/reactions

           *[[Determining essential genes/reactions]]
           *[[Loading from file]]

*[[How to calculate a Simplified Model]]

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           [[How to calculate critical genes/reactions]]
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*[[How to optimize the knockout set]]

            *[[Reaction deletions]]
            *[[Gene knockouts]]

*[[File format specifications]]

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-== HowTos for OptFlux 2 ==
 *[[How to create a new model/project from SBML]]
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              *[[Gene knockouts]]
-Formats specifications
+*[[File format specifications]]
-            *[[Flat files format specifications]]
-            *[http://sbml.org/Documents/Specifications SBML]
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 [[How to use Multiobjective strain optimization]]
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-[[Plugins]]
-              *[[EFM4OptFlux]]
-              *[[MFA4OptFlux]]
-              *[[OptKnock4OptFlux]]
-              *[[TNA4OptFlux]]
-              *[[RegulatoryTool]]
-              *[[OverUnder4OptFlux]]