Difference between revisions of "HowTos"

Revision as of 18:46, 16 November 2009

HowTos Page

     1 - How to create a new model/project from SBML
     2 - How to create a new model/project from text files
     3 - How to save and load projects
     4 - How to export models to SBML
     5 - Interaction with Cell Designer
           a - How to load a CD for visualization
           b - How to export a model to CD SBML (with results)
     6 - How to do a wild type simulation
     7 - How to do a mutant simulation
           a - Reaction delection
           b - Gene knockout
     8 - Environmental conditions
     9 - Flux Variability Analysis
           a - How to Calculate Flux Limits
           b - How to generate a Flux Variability Graph
     10 - Essential genes/reactions
           a - Determining essential genes/reactions
           b - Loading from file
     11 - Model Simplification
           a - How to calculate a Simplified Model
           b - How to calculate critical genes/reactions
     12 - How to optimize the knockout set
           a. Reaction deletions
           b. Gene knockouts
     13 - How to use Multiobjective strain optimization