From Optflux
(New page: '''HowTos Page''') |
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'''HowTos Page''' | '''HowTos Page''' | ||
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+ | 1 - How to create a new model/project from SBML | ||
+ | 2 - How to create a new model/project from text files | ||
+ | 3 - How to save and load projects | ||
+ | 4 - How to export models to SBML | ||
+ | 5 - Interaction with Cell Designer | ||
+ | a - How to load a CD for visualization | ||
+ | b - How to export a model to CD SBML (with results) | ||
+ | 6 - How to do a wild type simulation | ||
+ | 7 - How to do a mutant simulation | ||
+ | a - Reaction delection | ||
+ | b - Gene knockout | ||
+ | 8 - Environmental conditions | ||
+ | 9 - Flux Variability Analysis | ||
+ | a - How to Calculate Flux Limits | ||
+ | b - How to generate a Flux Variability Graph | ||
+ | 10 - Essential genes/reactions | ||
+ | a - Determining essential genes/reactions | ||
+ | b - Loading from file | ||
+ | 11 - Model Simplification | ||
+ | a - How to calculate a Simplified Model | ||
+ | b - How to calculate critical genes/reactions | ||
+ | 12 - How to optimize the knockout set | ||
+ | a. Reaction deletions | ||
+ | b. Gene knockouts | ||
+ | 13 - How to use Multiobjective strain optimization |
Revision as of 18:46, 16 November 2009
HowTos Page
1 - How to create a new model/project from SBML 2 - How to create a new model/project from text files 3 - How to save and load projects 4 - How to export models to SBML 5 - Interaction with Cell Designer a - How to load a CD for visualization b - How to export a model to CD SBML (with results) 6 - How to do a wild type simulation 7 - How to do a mutant simulation a - Reaction delection b - Gene knockout 8 - Environmental conditions 9 - Flux Variability Analysis a - How to Calculate Flux Limits b - How to generate a Flux Variability Graph 10 - Essential genes/reactions a - Determining essential genes/reactions b - Loading from file 11 - Model Simplification a - How to calculate a Simplified Model b - How to calculate critical genes/reactions 12 - How to optimize the knockout set a. Reaction deletions b. Gene knockouts 13 - How to use Multiobjective strain optimization