Editing OptFlux3:CDG

{{DISPLAYTITLE: CellDesigner plugin}}

OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Biovisualizer | here]].<br><br><br>

With this plugin it's possible to import layouts generated in CellDesigner. There are two ways to import the layouts:

- Using the wizard: If the sbml file contains the sbml model and the celldesigner notes regarding the layout, it's possible to use the [[Cell Designer Reader]] in the [[OptFlux3:CORE:NewProject|New Project Wizard]]. <br><br>

[[Image : CDWizard.png]]
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- If the sbml only contains the layout information, or a project was previously loaded to OptFlux without layout, it's possible to import a layout and associate it with a project in the clipboard.<br><br>

[[Image: ImportCDmenu.png]]
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[[Image: ImportCDGui.png]]
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The plugin also provides the possibility to export a layout with a flux distribution - which will change the thickness of the edges according to the normalized values of the fluxes.