From Optflux
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=Installation= | =Installation= | ||
− | After install the OptFlux, the | + | After install the OptFlux, the COBRA4OptFlux plugin can be installed through the repository manager present in OptFlux. |
*You can access the '''Repository''' option under the '''Help -> Repository Manager''' menu.<br> | *You can access the '''Repository''' option under the '''Help -> Repository Manager''' menu.<br> | ||
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=Configuration= | =Configuration= | ||
+ | <b><i>This plugin only works if the machine has the MATLAB application installed with the COBRA package.</i></b><br> | ||
+ | * Follow this link to [https://opencobra.github.io/cobratoolbox/ install COBRA toolbox in MATLAB] | ||
After install the Cobra4OptFlux plugin, some configurations must be performed. | After install the Cobra4OptFlux plugin, some configurations must be performed. | ||
*You can access the '''Preferences''' option under the '''Help -> Preferences''' menu.<br> | *You can access the '''Preferences''' option under the '''Help -> Preferences''' menu.<br> |
Latest revision as of 15:38, 4 March 2016
Installation[edit]
After install the OptFlux, the COBRA4OptFlux plugin can be installed through the repository manager present in OptFlux.
- You can access the Repository option under the Help -> Repository Manager menu.
- After accessing to the Repository Manager click over the Cobra for OptFlux (version x) and perform the installation by clicking on Install - Version x.x.x).
- Click on Restart button.
Configuration[edit]
This plugin only works if the machine has the MATLAB application installed with the COBRA package.
- Follow this link to install COBRA toolbox in MATLAB
After install the Cobra4OptFlux plugin, some configurations must be performed.
- You can access the Preferences option under the Help -> Preferences menu.
- After accessing the Preferences click over Matlab tab.
- Here you must select the MATLAB Executable path. This path is mandatory to perform the MATLAB operations.
- The Gurobi folder is optional but most of the available COBRA formulations use this solver thus this preference is highly recommendable.
- The Show MATLAB Console Only is optional and when disable the MATLAB will be opened as a full application.
- Click on Restart button if it is enable - Only happens when Gurobi Folder is added/changed.
And that's all!! You can press OK and if all is well defined the COBRA plugin for OptFlux can be used in full.