From Optflux
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[[How to do a wild type simulation]] | [[How to do a wild type simulation]] | ||
− | + | [[How to do a mutant simulation]] | |
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− | + | [[Reaction delection]] | |
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+ | [[Gene knockout]] | ||
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8 - Environmental conditions | 8 - Environmental conditions | ||
9 - Flux Variability Analysis | 9 - Flux Variability Analysis |
Revision as of 19:32, 16 November 2009
HowTos Page
How to create a new model/project from SBML
How to create a new model/project from text files
Interaction with Cell Designer
How to load a CD for visualization
How to export a model to CD SBML (with results)
How to do a wild type simulation
Reaction delection
Gene knockout
8 - Environmental conditions 9 - Flux Variability Analysis a - How to Calculate Flux Limits b - How to generate a Flux Variability Graph 10 - Essential genes/reactions a - Determining essential genes/reactions b - Loading from file 11 - Model Simplification a - How to calculate a Simplified Model b - How to calculate critical genes/reactions 12 - How to optimize the knockout set a. Reaction deletions b. Gene knockouts 13 - How to use Multiobjective strain optimization