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In the Environmental Conditions you can select the model/project to work, and set up your conditions.<br> | In the Environmental Conditions you can select the model/project to work, and set up your conditions.<br> | ||
| − | + | [[Image:Env conditions.png]] | |
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| − | In the reactions list you can search the reactions present in the model, select and change their limits (lower bound / upper bound) and add the new constraints to the reaction constraints list. The reactions in this list are typically extra-cellular/ | + | In the reactions list you can search the for reactions present in the model, select and change their flux limits (lower bound / upper bound) and consequently add the new constraints to the reaction constraints list. The reactions in this list are typically extra-cellular/ drains fluxes, i.e. they can be used to define the way rates in which external metabolites are consumed or produced.<br> |
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After you finish you will find a new icon representing the Environmental Conditions in the clipboard.<br> | After you finish you will find a new icon representing the Environmental Conditions in the clipboard.<br> | ||
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http://sites.google.com/site/optfluxhowtos/howtos/environmental-conditions/EnvironmentalConditionsSolution.png | http://sites.google.com/site/optfluxhowtos/howtos/environmental-conditions/EnvironmentalConditionsSolution.png | ||
Latest revision as of 19:38, 17 November 2009
How to create Environmental Conditions
You can access
the "Environmental Conditions" option under the "Simulation" menu.
In the Environmental Conditions you can select the model/project to work, and set up your conditions.
In the reactions list you can search the for reactions present in the model, select and change their flux limits (lower bound / upper bound) and consequently add the new constraints to the reaction constraints list. The reactions in this list are typically extra-cellular/ drains fluxes, i.e. they can be used to define the way rates in which external metabolites are consumed or produced.
After you finish you will find a new icon representing the Environmental Conditions in the clipboard.
http://sites.google.com/site/optfluxhowtos/howtos/environmental-conditions/EnvironmentalConditionsSolution.png
