From Optflux
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[[How to do a wild type simulation]] | [[How to do a wild type simulation]] | ||
| − | + | [[How to do a mutant simulation]] | |
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| − | + | [[Reaction delection]] | |
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| + | [[Gene knockout]] | ||
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8 - Environmental conditions | 8 - Environmental conditions | ||
9 - Flux Variability Analysis | 9 - Flux Variability Analysis | ||
Revision as of 19:32, 16 November 2009
HowTos Page
How to create a new model/project from SBML
How to create a new model/project from text files
Interaction with Cell Designer
How to load a CD for visualization
How to export a model to CD SBML (with results)
How to do a wild type simulation
Reaction delection
Gene knockout
8 - Environmental conditions
9 - Flux Variability Analysis
a - How to Calculate Flux Limits
b - How to generate a Flux Variability Graph
10 - Essential genes/reactions
a - Determining essential genes/reactions
b - Loading from file
11 - Model Simplification
a - How to calculate a Simplified Model
b - How to calculate critical genes/reactions
12 - How to optimize the knockout set
a. Reaction deletions
b. Gene knockouts
13 - How to use Multiobjective strain optimization