| Line 19: | Line 19: | ||
'''Note:''' The reaction order can be different from the model and any lines only with the Reaction_ID will be ignored. | '''Note:''' The reaction order can be different from the model and any lines only with the Reaction_ID will be ignored. | ||
| + | |||
| + | If the flux measured list is empty the following dialog will be shown. | ||
| + | === Third step === | ||
| − | === Third step | + | Enter the values displayed bellow. |
| + | |||
| + | ==== Third step b ==== | ||
| + | |||
| + | In order to visualize the flux values click on the respective the 'Flux Measures (Instance <Number>)''. In this example it is called ''Flux Measures (Instance 0)''. | ||
Revision as of 16:56, 1 March 2010
Contents
MFA4OptFlux Plug-in How-to
In this section the MFA4Optflux How-to is described.
First step
Load a metabolic model, see How to create a new model/project from SBML and How to create a new model/project from text files.
In this how-to the following Metatool model will be used: Media:MFAmetatool.txt
Second step
In Menu Plugins choose Plugins->MFA->Create Measured Values as shown in the following Figure. A Dialog will pop-up asking the measured flux values. Enter the set of measured values or load a set of flux values from a file.
The file has to respect the following format:
<Reaction_ID> <Delimiter><Measured Value>
Note: The reaction order can be different from the model and any lines only with the Reaction_ID will be ignored.
If the flux measured list is empty the following dialog will be shown.
Third step
Enter the values displayed bellow.
Third step b
In order to visualize the flux values click on the respective the 'Flux Measures (Instance <Number>). In this example it is called Flux Measures (Instance 0).