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| | {{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}} | | {{DISPLAYTITLE:Model-seed plug-in for OptFlux 3}} |
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| − | The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br />
| + | == Model-seed plug-in operations == |
| − | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.<br />
| + | *[[OptFlux3:CORE:NewProject|New project]] |
| − | In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.
| + | **[[CORE:Readers:Drains | Drains Definition]] |
| | + | **[[OptFlux Readers]] |
| | + | ***[[SBML Reader]] |
| | + | ***[[OptFlux3:MR | OptFlux Repository]] |
| | + | ***[[Flat Files Reader]] |
| | + | ***[[Table format Reader]] |
| | + | ***[[Cell Designer Reader]] |
| | + | *[[OptFlux3:CORE:ImportProject | Import Project]] |
| | + | *[[OptFlux3:SMP |Model Simplification]] |
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| − | == Model-seed plug-in operations == | + | === Technical documentation for developers === |
| − | [[File:Menu-ms.png]]
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| − | *[[ms-loginout | Login: operation to login in the local model-seed]]
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| − | *[[ms-loginout | Logout: operation to logout]]
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| − | *[[ms-pull | Pull (from MSeed to OptFlux):]]
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| − | **[[ms-pull#Pull_model | Model: import a model from model-seed to OptFlux]]
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| − | **[[ms-pull#Pull_media | Media: import a media from model-seed to OptFlux]]
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| − | * [[ms-commit | Commit (from OptFlux to MSeed):]]
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| − | **[[ms-commit#Commit_model |Model: send a model from OptFlux to model-seed]]
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| − | **[[ms-commit#Commit_media |Media: send a media from OptFlux to model-seed]]
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| − | *[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]]
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| − | *[[ms-import | Import from server to local model-seed:]]
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| − | **[[ms-import#Import_biochemistry | Biochemistry: import biochemistry]]
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| − | **[[ms-import#Import_mappings | Mappings: import mappings ]]
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| − | **[[ms-import#Import_genome | Genome: import annotation]]
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| − | *[[ms-model | Model]]
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| − | **[[ms-model | Build: build a model in local model-seed]]
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| − | **[[ms-fba | FBA]]
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| − | ***[[ms-fba#Wild-type_FBA | Wild Type]]
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| − | ***[[ms-fba#Reaction_KO_FBA | Reaction KO]]
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| − | ***[[ms-fba#Gene_KO_FBA | Gene KO]]
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| | | | |
| − | == Technical documentation for developers ==
| + | *[[Create a new plugin using the plugin builder]] |
| − | *[[Create a new plugin using the plugin builder (pdf)]] | |