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The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> | The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> | ||
| − | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in | + | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in. |
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== Model-seed plug-in operations == | == Model-seed plug-in operations == | ||
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*[[ms-loginout | Logout: operation to logout]] | *[[ms-loginout | Logout: operation to logout]] | ||
*[[ms-pull | Pull (from MSeed to OptFlux):]] | *[[ms-pull | Pull (from MSeed to OptFlux):]] | ||
| − | **[[ms-pull | + | **[[ms-pull | Model: import a model from model-seed to OptFlux]] |
| − | **[[ms-pull | + | **[[ms-pull | Media: import a media from model-seed to OptFlux]] |
* [[ms-commit | Commit (from OptFlux to MSeed):]] | * [[ms-commit | Commit (from OptFlux to MSeed):]] | ||
| − | **[[ms-commit | + | **[[ms-commit |Model: send a model from OptFlux to model-seed]] |
| − | **[[ms-commit | + | **[[ms-commit |Media: send a media from OptFlux to model-seed]] |
*[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]] | *[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]] | ||
*[[ms-import | Import from server to local model-seed:]] | *[[ms-import | Import from server to local model-seed:]] | ||
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**[[ms-import#Import_mappings | Mappings: import mappings ]] | **[[ms-import#Import_mappings | Mappings: import mappings ]] | ||
**[[ms-import#Import_genome | Genome: import annotation]] | **[[ms-import#Import_genome | Genome: import annotation]] | ||
| − | * | + | *Model |
| − | ** | + | **Build: build a model in local model-seed |
| − | **[[ms-fba | FBA]] | + | **[[ms-fba#Wild-type_FBA | FBA]] |
| − | ***[[ms-fba | + | ***[[ms-fba | Wild Type]] |
***[[ms-fba#Reaction_KO_FBA | Reaction KO]] | ***[[ms-fba#Reaction_KO_FBA | Reaction KO]] | ||
***[[ms-fba#Gene_KO_FBA | Gene KO]] | ***[[ms-fba#Gene_KO_FBA | Gene KO]] | ||