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(Created page with "{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: commit (from OptFlux to MSeed)}} The import operations of elements from OptFlux to the local model-seed are grouped in the men...")
 
 
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{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: commit (from OptFlux to MSeed)}}
 
{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: commit (from OptFlux to MSeed)}}
The import operations of elements from OptFlux to the local model-seed are grouped in the menu MSeed > Commit.<br />
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The import operations of elements from OptFlux to the local model-seed are grouped in the menu Plugin Builder > MSeed > Commit.<br />
[[File:Operations-pull.png]]
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[[File:Ms-commit.png]]
  
  
==Pull model==
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==Commit model==
To import a model from the local model-seed go to MSeed > Pull > Model. The user has to select the id of the local model to be imported and to identify the external compartment. A new project with the selected model will be created in the OptFlux workspace.<br />
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To import a model from OptFlux to the local model-seed go to Plugin Builder > MSeed > Commit > Model. The user has to select the OptFlux project and insert a name for the new model, the model from the selected project will be created in the local model-seed with the inserted name.<br />
[[File:Pull-model.png]]
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[[File:Commit-model.png]]
  
==Pull media==
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==Commit media==
To import a Media/Environmental condition from the local model-seed go to MSeed > Pull > Media. The user has to select:  
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To import a Media/Environmental condition from OptFlux to the local model-seed go to Plugin Builder > MSeed > Commit > Media. The user has to select:  
 
*the local model-seed biochemistry  
 
*the local model-seed biochemistry  
*the OptFlux project where the media will be added
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*the OptFlux project containing the Environmental Condition
*the Media to be pulled (that is retrieved directly from The Seed).  
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*the Environmental condition name.  
A new Environmental condition will be created in the selected OptFlux project.<br />
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A new Media will be created in the local model-seed from the selected Environmental Condition.<br />
[[File:Pull-media.png]]
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[[File:Commit-media.png]]
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<br />
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<br />[[MS-howto|''Return to the Model-seed How-to Index'']]

Latest revision as of 18:34, 25 March 2013

The import operations of elements from OptFlux to the local model-seed are grouped in the menu Plugin Builder > MSeed > Commit.
Ms-commit.png


Commit model[edit]

To import a model from OptFlux to the local model-seed go to Plugin Builder > MSeed > Commit > Model. The user has to select the OptFlux project and insert a name for the new model, the model from the selected project will be created in the local model-seed with the inserted name.
Commit-model.png

Commit media[edit]

To import a Media/Environmental condition from OptFlux to the local model-seed go to Plugin Builder > MSeed > Commit > Media. The user has to select:

  • the local model-seed biochemistry
  • the OptFlux project containing the Environmental Condition
  • the Environmental condition name.

A new Media will be created in the local model-seed from the selected Environmental Condition.
Commit-media.png



Return to the Model-seed How-to Index