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{{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: Model FBA}} | {{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: Model FBA}} | ||
| − | [[File:Operations-model-fba.png]] | + | [[File:Operations-model-fba.png]] |
| − | The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu | + | The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu MSeed > Operations > Model > FBA. |
==Wild-type FBA == | ==Wild-type FBA == | ||
| − | To do a Wild-type simulation go to | + | To do a Wild-type simulation go to MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemisty and media to be used in the simulation. |
| − | A simulation result will be created in the OptFlux workspace. | + | A simulation result will be created in the OptFlux workspace. |
[[File:Model-fba-wt.png]] | [[File:Model-fba-wt.png]] | ||
==Reaction KO FBA== | ==Reaction KO FBA== | ||
| − | To perform a reaction knock-out simulation go to | + | To perform a reaction knock-out simulation go to MSeed > Operations > Model > FBA > Reaction KO and select: |
*the local model-seed | *the local model-seed | ||
*the biochemisty | *the biochemisty | ||
*media | *media | ||
| − | * | + | *reaction to be turned off in the simulation.<br /> |
A simulation result will be created in the OptFlux workspace.<br /> | A simulation result will be created in the OptFlux workspace.<br /> | ||
[[File:Model-fba-reactions.png]] | [[File:Model-fba-reactions.png]] | ||
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==Gene KO FBA== | ==Gene KO FBA== | ||
N/A | N/A | ||
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