To do a Wild-type simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemistry and media to be used in the simulation.
A simulation result will be created in the OptFlux workspace.
Reaction KO FBA
To perform a reaction knock-out simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Reaction KO and select:
- the local model-seed
- the biochemisty
- reactions to be turned off in the simulation.
Gene KO FBA