Ms-fba

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Operations-model-fba.png
The operations to perform FBA simulations in model-seed with local model-seed models are grouped in the menu Plugin Builder > MSeed > Operations > Model > FBA.

Wild-type FBA[edit]

To do a Wild-type simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Wild Type and select the local model-seed to use and the biochemistry and media to be used in the simulation.
A simulation result will be created in the OptFlux workspace.
Model-fba-wt.png

Reaction KO FBA[edit]

To perform a reaction knock-out simulation go to Plugin Builder > MSeed > Operations > Model > FBA > Reaction KO and select:

  • the local model-seed
  • the biochemisty
  • media
  • reactions to be turned off in the simulation.

A simulation result will be created in the OptFlux workspace.
Model-fba-reactions.png

Gene KO FBA[edit]

N/A



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