Difference between revisions of "HowTos"

Revision as of 19:38, 16 November 2009

HowTos Page

How to create a new model/project from SBML

How to create a new model/project from text files

How to save and load projects

How to export models to SBML

Interaction with Cell Designer

           How to load a CD for visualization

           How to export a model to CD SBML (with results)

How to do a wild type simulation

How to do a mutant simulation

           Reaction delection

           Gene knockout

Environmental conditions

     9 - Flux Variability Analysis
           a - How to Calculate Flux Limits
           b - How to generate a Flux Variability Graph
     10 - Essential genes/reactions
           a - Determining essential genes/reactions
           b - Loading from file
     11 - Model Simplification
           a - How to calculate a Simplified Model
           b - How to calculate critical genes/reactions
     12 - How to optimize the knockout set
           a. Reaction deletions
           b. Gene knockouts
     13 - How to use Multiobjective strain optimization