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+ | {{DISPLAYTITLE:Model-seed plug-in for OptFlux 3: import}} | ||
+ | |||
[[File:Operations-import.png]] | [[File:Operations-import.png]] | ||
+ | |||
+ | The Model-seed works in two levels, a local server and The seed server, it is possible to import to the local model-seed: | ||
+ | *biochemistry data | ||
+ | *genome annotations | ||
+ | *mappings | ||
+ | And use these data elements in local operations. | ||
+ | |||
+ | == Import biochemistry == | ||
+ | To import a biochemistry select the option Plugin Builder > MSeed > Import > Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.<br /> | ||
+ | [[File:Import-biochem.png]] | ||
+ | |||
+ | == Import mappings == | ||
+ | To import a mapping select the option Plugin Builder > MSeed > Import > Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.<br /> | ||
+ | |||
+ | [[File:Import-mappings.png]] | ||
+ | |||
+ | == Import genome == | ||
+ | To import a genome select the option Plugin Builder > MSeed > Import > Mappings: | ||
+ | *choose one of the available genomes in The Seed | ||
+ | *a name for the local annotation | ||
+ | *the mapping available locally to be used. | ||
+ | A new genome annotation will be created in the local model-seed with the inserted name.<br /> | ||
+ | [[File:Import-genome.png]] | ||
+ | |||
+ | <br /> | ||
+ | <br />[[MS-howto|''Return to the Model-seed How-to Index'']] |
Latest revision as of 18:34, 25 March 2013
The Model-seed works in two levels, a local server and The seed server, it is possible to import to the local model-seed:
- biochemistry data
- genome annotations
- mappings
And use these data elements in local operations.
Import biochemistry[edit]
To import a biochemistry select the option Plugin Builder > MSeed > Import > Biochemistry and choose a name for the local data element. OptFlux will then ask Model-seed to retrieve the latest biochemistry version from The Seed and to create local of version with the selected name.
Import mappings[edit]
To import a mapping select the option Plugin Builder > MSeed > Import > Mappings and choose a name for the local data element and the local biochemistry to be associated to the new mapping. OptFlux will then ask Model-seed to retrieve the mapping from The Seed and to create a local of version with the inserted name and connected to the selected local biochemistry.
Import genome[edit]
To import a genome select the option Plugin Builder > MSeed > Import > Mappings:
- choose one of the available genomes in The Seed
- a name for the local annotation
- the mapping available locally to be used.
A new genome annotation will be created in the local model-seed with the inserted name.