| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{DISPLAYTITLE: CellDesigner plugin}} | {{DISPLAYTITLE: CellDesigner plugin}} | ||
| − | OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Biovisualizer | here]]. | + | OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Biovisualizer | here]].<br><br><br> |
With this plugin it's possible to import layouts generated in CellDesigner. There are two ways to import the layouts: | With this plugin it's possible to import layouts generated in CellDesigner. There are two ways to import the layouts: | ||
| Line 8: | Line 8: | ||
[[Image : CDWizard.png]] | [[Image : CDWizard.png]] | ||
| + | <br><br> | ||
| + | - If the sbml only contains the layout information, or a project was previously loaded to OptFlux without layout, it's possible to import a layout and associate it with a project in the clipboard.<br><br> | ||
| − | + | [[Image: ImportCDmenu.png]] | |
| − | + | <br><br> | |
| − | + | [[Image: ImportCDGui.png]] | |
| + | <br><br> | ||
The plugin also provides the possibility to export a layout with a flux distribution - which will change the thickness of the edges according to the normalized values of the fluxes. | The plugin also provides the possibility to export a layout with a flux distribution - which will change the thickness of the edges according to the normalized values of the fluxes. | ||
| + | <br><br> | ||
| + | [[Image: ExportCDmenu.png]] | ||
| + | <br><br> | ||
| + | To export the layout just select the project and the layout, a flux distribution and a range of values for the thickness of the edges. | ||
| + | <br><br> | ||
| + | [[Image: ExportCDGUI.png]] | ||
| + | <br><br> | ||
Latest revision as of 12:17, 21 January 2013
OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them here.
With this plugin it's possible to import layouts generated in CellDesigner. There are two ways to import the layouts:
- Using the wizard: If the sbml file contains the sbml model and the celldesigner notes regarding the layout, it's possible to use the Cell Designer Reader in the New Project Wizard.
- If the sbml only contains the layout information, or a project was previously loaded to OptFlux without layout, it's possible to import a layout and associate it with a project in the clipboard.
The plugin also provides the possibility to export a layout with a flux distribution - which will change the thickness of the edges according to the normalized values of the fluxes.
To export the layout just select the project and the layout, a flux distribution and a range of values for the thickness of the edges.
