From Optflux
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OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Biovisualizer | here]]. | OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Biovisualizer | here]]. | ||
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| + | With this plugin it's possible to import layouts generated in CellDesigner. There are two ways to import the layouts: | ||
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| + | - Using the wizard: If the sbml file contains the sbml model and the celldesigner notes regarding the layout, it's possible to use the [[Cell Designer Reader]] in the [[OptFlux3:CORE:NewProject|New Project Wizard]]. <br><br> | ||
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| + | [[Image : CDWizard.png]] | ||
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| + | - Importing to the model | ||
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| + | The plugin also provides the possibility to export a layout with a flux distribution - which will change the thickness of the edges according to the normalized values of the fluxes. | ||
Revision as of 12:02, 21 January 2013
OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them here.
With this plugin it's possible to import layouts generated in CellDesigner. There are two ways to import the layouts:
- Using the wizard: If the sbml file contains the sbml model and the celldesigner notes regarding the layout, it's possible to use the Cell Designer Reader in the New Project Wizard.
- Importing to the model
The plugin also provides the possibility to export a layout with a flux distribution - which will change the thickness of the edges according to the normalized values of the fluxes.