From Optflux
| Line 31: | Line 31: | ||
[[How to generate a Flux Variability Graph]] | [[How to generate a Flux Variability Graph]] | ||
| − | + | Essential genes/reactions | |
| − | + | ||
| − | + | [[Determining essential genes/reactions]] | |
| + | |||
| + | [[Loading from file]] | ||
| + | |||
11 - Model Simplification | 11 - Model Simplification | ||
a - How to calculate a Simplified Model | a - How to calculate a Simplified Model | ||
Revision as of 19:48, 16 November 2009
HowTos Page
How to create a new model/project from SBML
How to create a new model/project from text files
Interaction with Cell Designer
How to load a CD for visualization
How to export a model to CD SBML (with results)
How to do a wild type simulation
Reaction delection
Gene knockout
Flux Variability Analysis
How to Calculate Flux Limits
How to generate a Flux Variability Graph
Essential genes/reactions
Determining essential genes/reactions
Loading from file
11 - Model Simplification
a - How to calculate a Simplified Model
b - How to calculate critical genes/reactions
12 - How to optimize the knockout set
a. Reaction deletions
b. Gene knockouts
13 - How to use Multiobjective strain optimization