From Optflux
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[[How to load a CD for visualization]] | [[How to load a CD for visualization]] | ||
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[[How to export a model to CD SBML (with results)]] | [[How to export a model to CD SBML (with results)]] | ||
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[[Reaction delection]] | [[Reaction delection]] | ||
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[[Gene knockout]] | [[Gene knockout]] | ||
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[[How to Calculate Flux Limits]] | [[How to Calculate Flux Limits]] | ||
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[[How to generate a Flux Variability Graph]] | [[How to generate a Flux Variability Graph]] | ||
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[[Determining essential genes/reactions]] | [[Determining essential genes/reactions]] | ||
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11 - Model Simplification | 11 - Model Simplification | ||
Revision as of 19:48, 16 November 2009
HowTos Page
How to create a new model/project from SBML
How to create a new model/project from text files
Interaction with Cell Designer
How to load a CD for visualization How to export a model to CD SBML (with results)
How to do a wild type simulation
Reaction delection Gene knockout
Flux Variability Analysis
How to Calculate Flux Limits How to generate a Flux Variability Graph
Essential genes/reactions
Determining essential genes/reactions Loading from file
11 - Model Simplification
a - How to calculate a Simplified Model
b - How to calculate critical genes/reactions
12 - How to optimize the knockout set
a. Reaction deletions
b. Gene knockouts
13 - How to use Multiobjective strain optimization