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[[How to export models to SBML]]
 
[[How to export models to SBML]]
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[[How to export models to Flat Files]]
  
 
[[Interaction with Cell Designer]]
 
[[Interaction with Cell Designer]]
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             [[How to load a CD model for visualization]]
 
             [[How to load a CD model for visualization]]
 
             [[How to export a model to CD SBML (with results)]]
 
             [[How to export a model to CD SBML (with results)]]
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            [[How to do a simulation overlap with a CD model]]
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[[How to do a wild type simulation]]
 
[[How to do a wild type simulation]]
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             [[Gene knockouts]]
 
             [[Gene knockouts]]
  
Graph overlap!
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[[File format specifications]]
File formats
 
export to flat files
 
  
 
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[[How to use Multiobjective strain optimization]]
 
[[How to use Multiobjective strain optimization]]
 
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Revision as of 17:40, 18 November 2009

How to create a new model/project from SBML

How to create a new model/project from text files

How to save and load projects

How to export models to SBML

How to export models to Flat Files

Interaction with Cell Designer

           How to load a CD model for visualization
           How to export a model to CD SBML (with results)
           How to do a simulation overlap with a CD model


How to do a wild type simulation

How to do a mutant simulation

           Reaction deletion
           Gene knockout

Environmental conditions

Flux Variability Analysis

           How to Calculate Flux Limits
           How to generate a Flux Variability Graph

Essential genes/reactions

          Determining essential genes/reactions
          Loading from file

How to calculate a Simplified Model

How to optimize the knockout set

           Reaction deletions
           Gene knockouts

File format specifications