From Optflux
Line 6: | Line 6: | ||
[[How to export models to SBML]] | [[How to export models to SBML]] | ||
+ | |||
+ | [[How to export models to Flat Files]] | ||
[[Interaction with Cell Designer]] | [[Interaction with Cell Designer]] | ||
Line 11: | Line 13: | ||
[[How to load a CD model for visualization]] | [[How to load a CD model for visualization]] | ||
[[How to export a model to CD SBML (with results)]] | [[How to export a model to CD SBML (with results)]] | ||
+ | [[How to do a simulation overlap with a CD model]] | ||
+ | |||
[[How to do a wild type simulation]] | [[How to do a wild type simulation]] | ||
Line 41: | Line 45: | ||
[[Gene knockouts]] | [[Gene knockouts]] | ||
− | + | [[File format specifications]] | |
− | File | ||
− | |||
<!-- | <!-- | ||
[[How to use Multiobjective strain optimization]] | [[How to use Multiobjective strain optimization]] | ||
--> | --> |
Revision as of 17:40, 18 November 2009
How to create a new model/project from SBML
How to create a new model/project from text files
How to export models to Flat Files
Interaction with Cell Designer
How to load a CD model for visualization How to export a model to CD SBML (with results) How to do a simulation overlap with a CD model
How to do a wild type simulation
Reaction deletion Gene knockout
Flux Variability Analysis
How to Calculate Flux Limits How to generate a Flux Variability Graph
Essential genes/reactions
Determining essential genes/reactions Loading from file
How to calculate a Simplified Model
How to optimize the knockout set
Reaction deletions Gene knockouts