From Optflux
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*[[How to create a new model/project from SBML]] | *[[How to create a new model/project from SBML]] | ||
| − | [[How to create a new model/project from text files]] | + | *[[How to create a new model/project from text files]] |
| − | [[How to save and load projects]] | + | *[[How to save and load projects]] |
| − | [[How to export models to SBML]] | + | *[[How to export models to SBML]] |
| − | [[How to export models to Flat Files]] | + | *[[How to export models to Flat Files]] |
| − | [[Interaction with Cell Designer]] | + | *[[Interaction with Cell Designer]] |
| − | [[How to load a CD model for visualization]] | + | *[[How to load a CD model for visualization]] |
| − | [[How to export a model to CD SBML (with results)]] | + | *[[How to export a model to CD SBML (with results)]] |
| − | [[How to do a simulation overlap with a CD model]] | + | *[[How to do a simulation overlap with a CD model]] |
| − | [[How to do a wild type simulation]] | + | *[[How to do a wild type simulation]] |
| − | [[How to do a mutant simulation]] | + | *[[How to do a mutant simulation]] |
| − | [[Reaction deletion]] | + | *[[Reaction deletion]] |
| − | [[Gene knockout]] | + | *[[Gene knockout]] |
| − | [[Environmental conditions]] | + | *[[Environmental conditions]] |
| − | Flux Variability Analysis | + | *Flux Variability Analysis |
| − | [[How to Calculate Flux Limits]] | + | *[[How to Calculate Flux Limits]] |
| − | [[How to generate a Flux Variability Graph]] | + | *[[How to generate a Flux Variability Graph]] |
| − | Essential genes/reactions | + | *Essential genes/reactions |
| − | [[Determining essential genes/reactions]] | + | *[[Determining essential genes/reactions]] |
| − | [[Loading from file]] | + | *[[Loading from file]] |
| − | [[How to calculate a Simplified Model]] | + | *[[How to calculate a Simplified Model]] |
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[[How to calculate critical genes/reactions]] | [[How to calculate critical genes/reactions]] | ||
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| − | [[How to optimize the knockout set]] | + | *[[How to optimize the knockout set]] |
| − | [[Reaction deletions]] | + | *[[Reaction deletions]] |
| − | [[Gene knockouts]] | + | *[[Gene knockouts]] |
| − | [[File format specifications]] | + | *[[File format specifications]] |
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[[How to use Multiobjective strain optimization]] | [[How to use Multiobjective strain optimization]] | ||
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Revision as of 18:03, 18 November 2009
*How to load a CD model for visualization *How to export a model to CD SBML (with results) *How to do a simulation overlap with a CD model
*Reaction deletion *Gene knockout
- Flux Variability Analysis
*How to Calculate Flux Limits *How to generate a Flux Variability Graph
- Essential genes/reactions
*Determining essential genes/reactions *Loading from file
*Reaction deletions *Gene knockouts