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'''HowTos Page'''
 
 
 
[[How to create a new model/project from SBML]]
 
[[How to create a new model/project from SBML]]
  
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           [[Loading from file]]
 
           [[Loading from file]]
  
      11 - Model Simplification
+
[[How to calculate a Simplified Model]]
            a - How to calculate a Simplified Model
+
 
            b - How to calculate critical genes/reactions
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          [[How to calculate critical genes/reactions]]
 +
 
 
       12 - How to optimize the knockout set
 
       12 - How to optimize the knockout set
 
             a. Reaction deletions
 
             a. Reaction deletions
 
             b. Gene knockouts
 
             b. Gene knockouts
 
       13 - How to use Multiobjective strain optimization
 
       13 - How to use Multiobjective strain optimization

Revision as of 20:00, 16 November 2009

How to create a new model/project from SBML

How to create a new model/project from text files

How to save and load projects

How to export models to SBML

Interaction with Cell Designer

           How to load a CD for visualization
           How to export a model to CD SBML (with results)

How to do a wild type simulation

How to do a mutant simulation

           Reaction delection
           Gene knockout

Environmental conditions

Flux Variability Analysis

           How to Calculate Flux Limits
           How to generate a Flux Variability Graph

Essential genes/reactions

          Determining essential genes/reactions
          Loading from file

How to calculate a Simplified Model

          How to calculate critical genes/reactions
     12 - How to optimize the knockout set
           a. Reaction deletions
           b. Gene knockouts
     13 - How to use Multiobjective strain optimization