Difference between revisions of "HowTos"

Revision as of 20:07, 16 November 2009

How to create a new model/project from SBML

How to create a new model/project from text files

How to save and load projects

How to export models to SBML

Interaction with Cell Designer

           How to load a CD for visualization
           How to export a model to CD SBML (with results)

How to do a wild type simulation

How to do a mutant simulation

           Reaction delection
           Gene knockout

Environmental conditions

Flux Variability Analysis

           How to Calculate Flux Limits
           How to generate a Flux Variability Graph

Essential genes/reactions

          Determining essential genes/reactions
          Loading from file

How to calculate a Simplified Model

          How to calculate critical genes/reactions

How to optimize the knockout set

           Reaction deletions
           Gene knockouts

How to use Multiobjective strain optimization