From Optflux
Simao.soares (talk | contribs) |
Simao.soares (talk | contribs) (→Model-seed plug-in operations) |
||
(5 intermediate revisions by the same user not shown) | |||
Line 2: | Line 2: | ||
The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> | The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br /> | ||
− | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in. | + | If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.<br /> |
+ | In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed. | ||
== Model-seed plug-in operations == | == Model-seed plug-in operations == | ||
Line 10: | Line 11: | ||
*[[ms-pull | Pull (from MSeed to OptFlux):]] | *[[ms-pull | Pull (from MSeed to OptFlux):]] | ||
**[[ms-pull#Pull_model | Model: import a model from model-seed to OptFlux]] | **[[ms-pull#Pull_model | Model: import a model from model-seed to OptFlux]] | ||
− | **[[ms- | + | **[[ms-pull#Pull_media | Media: import a media from model-seed to OptFlux]] |
* [[ms-commit | Commit (from OptFlux to MSeed):]] | * [[ms-commit | Commit (from OptFlux to MSeed):]] | ||
− | **[[ms-commit |Model: send a model from OptFlux to model-seed]] | + | **[[ms-commit#Commit_model |Model: send a model from OptFlux to model-seed]] |
− | **[[ms-commit |Media: send a media from OptFlux to model-seed]] | + | **[[ms-commit#Commit_media |Media: send a media from OptFlux to model-seed]] |
*[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]] | *[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]] | ||
*[[ms-import | Import from server to local model-seed:]] | *[[ms-import | Import from server to local model-seed:]] | ||
Line 19: | Line 20: | ||
**[[ms-import#Import_mappings | Mappings: import mappings ]] | **[[ms-import#Import_mappings | Mappings: import mappings ]] | ||
**[[ms-import#Import_genome | Genome: import annotation]] | **[[ms-import#Import_genome | Genome: import annotation]] | ||
− | *Model | + | *[[ms-model | Model]] |
− | **Build: build a model in local model-seed | + | **[[ms-model | Build: build a model in local model-seed]] |
− | **[[ms-fba | + | **[[ms-fba | FBA]] |
− | ***[[ms-fba | Wild Type]] | + | ***[[ms-fba#Wild-type_FBA | Wild Type]] |
***[[ms-fba#Reaction_KO_FBA | Reaction KO]] | ***[[ms-fba#Reaction_KO_FBA | Reaction KO]] | ||
***[[ms-fba#Gene_KO_FBA | Gene KO]] | ***[[ms-fba#Gene_KO_FBA | Gene KO]] |
Latest revision as of 18:18, 25 March 2013
The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.
Model-seed plug-in operations[edit]
- Login: operation to login in the local model-seed
- Logout: operation to logout
- Pull (from MSeed to OptFlux):
- Commit (from OptFlux to MSeed):
- Merge Biochemistry: merge two biochemistries in local model-seed
- Import from server to local model-seed:
- Model