Difference between revisions of "MS-howto"

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(Model-seed plug-in operations)
 
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The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br />  
 
The Model-seed operations are located in the menu Plug-in Builder -> MSeed.<br />  
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
+
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.<br />
 +
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.
  
 
== Model-seed plug-in operations ==
 
== Model-seed plug-in operations ==
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*[[ms-loginout | Logout: operation to logout]]
 
*[[ms-loginout | Logout: operation to logout]]
 
*[[ms-pull | Pull (from MSeed to OptFlux):]]
 
*[[ms-pull | Pull (from MSeed to OptFlux):]]
**[[ms-pull | Model: import a model from model-seed to OptFlux]]
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**[[ms-pull#Pull_model | Model: import a model from model-seed to OptFlux]]
**[[ms-pull | Media: import a media from model-seed to OptFlux]]
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**[[ms-pull#Pull_media | Media: import a media from model-seed to OptFlux]]
 
* [[ms-commit | Commit (from OptFlux to MSeed):]]
 
* [[ms-commit | Commit (from OptFlux to MSeed):]]
**[[ms-commit |Model: send a model from OptFlux to model-seed]]
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**[[ms-commit#Commit_model |Model: send a model from OptFlux to model-seed]]
**[[ms-commit |Media: send a media from OptFlux to model-seed]]
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**[[ms-commit#Commit_media |Media: send a media from OptFlux to model-seed]]
 
*[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]]
 
*[[merge-biochems | Merge Biochemistry: merge two biochemistries in local model-seed]]
 
*[[ms-import | Import from server to local model-seed:]]
 
*[[ms-import | Import from server to local model-seed:]]
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**[[ms-import#Import_mappings | Mappings: import mappings ]]
 
**[[ms-import#Import_mappings | Mappings: import mappings ]]
 
**[[ms-import#Import_genome | Genome: import annotation]]
 
**[[ms-import#Import_genome | Genome: import annotation]]
*Model
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*[[ms-model | Model]]
**Build: build a model in local model-seed
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**[[ms-model | Build: build a model in local model-seed]]
**[[ms-fba#Wild-type_FBA | FBA]]
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**[[ms-fba | FBA]]
***[[ms-fba | Wild Type]]
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***[[ms-fba#Wild-type_FBA | Wild Type]]
 
***[[ms-fba#Reaction_KO_FBA | Reaction KO]]
 
***[[ms-fba#Reaction_KO_FBA | Reaction KO]]
 
***[[ms-fba#Gene_KO_FBA | Gene KO]]
 
***[[ms-fba#Gene_KO_FBA | Gene KO]]

Latest revision as of 18:18, 25 March 2013


The Model-seed operations are located in the menu Plug-in Builder -> MSeed.
If the MS plug-in is not yet loaded in OptFlux, just go to to Plug-in Builder -> Create... and select the MS XML file, OptFlux will then automatically build the new plug-in.
In the log window (bottom of the OptFlux window) it is possible to see the communication between OptFlux and Model-seed and the commands that are being executed.

Model-seed plug-in operations[edit]

Menu-ms.png

Technical documentation for developers[edit]