From Optflux
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- 19:06, 17 November 2009 (diff | hist) . . (+383) . . How to calculate a Simplified Model
- 19:01, 17 November 2009 (diff | hist) . . (+7) . . HowTos
- 18:55, 17 November 2009 (diff | hist) . . (+16) . . Reaction deletions (current)
- 18:54, 17 November 2009 (diff | hist) . . (-355) . . Reaction deletions
- 18:41, 17 November 2009 (diff | hist) . . (0) . . N File:Reaction knockout.png
- 18:40, 17 November 2009 (diff | hist) . . (-163) . . Reaction deletions
- 18:37, 17 November 2009 (diff | hist) . . (+55) . . How to optimize the knockout set (current)
- 18:34, 17 November 2009 (diff | hist) . . (+15) . . HowTos
- 18:34, 17 November 2009 (diff | hist) . . (-143) . . Gene knockouts (current)
- 18:33, 17 November 2009 (diff | hist) . . (0) . . N File:Optmization menu.png (current)
- 18:28, 17 November 2009 (diff | hist) . . (-154) . . Gene knockouts
- 18:28, 17 November 2009 (diff | hist) . . (0) . . N File:Gene knockout.png (current)
- 17:53, 17 November 2009 (diff | hist) . . (+113) . . Gene knockouts
- 17:46, 17 November 2009 (diff | hist) . . (+10) . . HowTos
- 17:42, 17 November 2009 (diff | hist) . . (+6) . . How to load a CD model for visualization
- 17:42, 17 November 2009 (diff | hist) . . (+674) . . N How to load a CD model for visualization (New page: <b>How to load a CD for visualization<br> <br> </b>You can access the "Load CD for visualization" option under the "Project -> Load" menu or right clicking on the project icon in the cl...)
- 17:42, 17 November 2009 (diff | hist) . . (+6) . . HowTos
- 17:38, 17 November 2009 (diff | hist) . . (-1) . . How to create a new model/project from text files
- 17:38, 17 November 2009 (diff | hist) . . (+154) . . How to create a new model/project from text files
- 17:35, 17 November 2009 (diff | hist) . . (+248) . . How to create a new model/project from SBML
- 17:33, 17 November 2009 (diff | hist) . . (-6) . . How to create a new model/project from SBML
- 15:48, 17 November 2009 (diff | hist) . . (+18) . . How to do a mutant simulation
- 15:38, 17 November 2009 (diff | hist) . . (+23) . . How to do a mutant simulation
- 20:14, 16 November 2009 (diff | hist) . . (-206) . . How to use Multiobjective strain optimization (current)
- 20:14, 16 November 2009 (diff | hist) . . (-25) . . How to use Multiobjective strain optimization
- 20:13, 16 November 2009 (diff | hist) . . (+3,169) . . N How to use Multiobjective strain optimization (New page: <b>How to use Multiobjective strain optimization - Reaction Deletions</b><br> <br> You can access the "Multiobjective Reaction Knockout Optimization" on the menu "Multiobjective" under the...)
- 20:11, 16 November 2009 (diff | hist) . . (-14) . . Gene knockouts
- 20:11, 16 November 2009 (diff | hist) . . (+3,094) . . N Gene knockouts (New page: <b>How to optimize optimize the knockout set - Gene knockouts</b><br> <br> You can access the "Gene Knockout Optimization" option under the "Optimization" menu.<br> <i><b>To use this optim...)
- 20:09, 16 November 2009 (diff | hist) . . (-6) . . Reaction deletions
- 20:09, 16 November 2009 (diff | hist) . . (+3,317) . . N Reaction deletions (New page: <b>How to optimize optimize the knockout set - Reaction Deletions</b><br> <br> You can access the "Reaction Knockout Optimization" option under the "Optimization" menu.<br> <div style="dis...)
- 20:07, 16 November 2009 (diff | hist) . . (+187) . . Nm How to optimize the knockout set (New page: OptFlux allows to perform strain optimization that aim to identify the best sets of genes or reactions to delete from a model (knockouts) to achieve the production of a specific compound.)
- 20:07, 16 November 2009 (diff | hist) . . (-10) . . HowTos
- 20:05, 16 November 2009 (diff | hist) . . (+1,424) . . N How to calculate critical genes/reactions (New page: <b>How to calculate a Critical Genes/Reactions</b><br> <br> You can access the "Calculate Critical Genes/Reactions" option under the "Model Simplification" menu or doing right click on the...) (current)
- 20:03, 16 November 2009 (diff | hist) . . (-10) . . How to calculate a Simplified Model
- 20:02, 16 November 2009 (diff | hist) . . (+2,164) . . N How to calculate a Simplified Model (New page: OptFlux provides a number of model simplification operations aiming at reducing the model size but keeping the model mathematically equivalent to the original. These simplified models are ...)
- 20:00, 16 November 2009 (diff | hist) . . (-62) . . HowTos
- 19:57, 16 November 2009 (diff | hist) . . (-5) . . Loading from file
- 19:57, 16 November 2009 (diff | hist) . . (+1,033) . . N Loading from file (New page: <b>How to load critical Genes/Reactions</b><br> <br> To load the information from a file just access the "Load Critical Genes/Reactions" option under the "Load" menu in the Project Menu or...)
- 19:55, 16 November 2009 (diff | hist) . . (-10) . . Determining essential genes/reactions
- 19:54, 16 November 2009 (diff | hist) . . (+2,054) . . N Determining essential genes/reactions (New page: <b>How to calculate a Critical Genes/Reactions</b><br> <br> OptFlux allows the users to define which are the genes or reactions that are essential for the strain to survive, i.e. to keep a...)
- 19:48, 16 November 2009 (diff | hist) . . (-5) . . HowTos
- 19:48, 16 November 2009 (diff | hist) . . (-9) . . HowTos
- 19:46, 16 November 2009 (diff | hist) . . (-5) . . How to generate a Flux Variability Graph
- 19:46, 16 November 2009 (diff | hist) . . (+1,819) . . N How to generate a Flux Variability Graph (New page: <b>How to generate a Flux Variability Graph</b><br> <br> You can access the "Flux Variability Graph" option under the "Simulation -> Flux Variability Analysis" menu or right clicking on...)
- 19:44, 16 November 2009 (diff | hist) . . (-7) . . How to Calculate Flux Limits
- 19:44, 16 November 2009 (diff | hist) . . (+1,524) . . N How to Calculate Flux Limits (New page: <b>How to Calculate Flux Limits</b><br> <b><br> </b>You can access the "Calculate Flux Limits" option under the "Simulation -> Flux Variability Analysis" menu or right clicking on the M...)
- 19:41, 16 November 2009 (diff | hist) . . (-7) . . HowTos
- 19:40, 16 November 2009 (diff | hist) . . (-57) . . Environmental conditions
- 19:39, 16 November 2009 (diff | hist) . . (+1,221) . . N Environmental conditions (New page: <b>How to create Environmental Conditions</b><br> <br> You can access the "Environmental Conditions" option under the "Simulation" menu.<br> <div style="display: block; text-align: left;">...)
- 19:38, 16 November 2009 (diff | hist) . . (-5) . . HowTos
- 19:37, 16 November 2009 (diff | hist) . . (-10) . . Gene knockout
- 19:36, 16 November 2009 (diff | hist) . . (-15) . . Gene knockout
- 19:36, 16 November 2009 (diff | hist) . . (+2,197) . . N Gene knockout (New page: <b>How to do a mutant simulation - Reaction Deletions</b><br> <br> You can access the "Gene Mutant" option under the "Simulation -> Mutants Simulation" menu or right clicking on the Met...)
- 19:34, 16 November 2009 (diff | hist) . . (-20) . . Reaction delection
- 19:34, 16 November 2009 (diff | hist) . . (+2,189) . . N Reaction delection (New page: <b>How to do a mutant simulation - Reaction Deletions</b><br> <br> You can access the "Reaction Mutant" option under the "Simulation -> Mutants Simulation" menu or right clicking on the...)
- 19:32, 16 November 2009 (diff | hist) . . (+165) . . N How to do a mutant simulation (New page: OptFlux allows the user to perform a simulation a mutant strain, i.e. of the model with some genetic modifications, in this case a set of gene or reaction deletions.)
- 19:32, 16 November 2009 (diff | hist) . . (-3) . . HowTos
- 19:31, 16 November 2009 (diff | hist) . . (-1) . . m How to do a wild type simulation
- 19:30, 16 November 2009 (diff | hist) . . (+9) . . How to do a wild type simulation
- 19:30, 16 November 2009 (diff | hist) . . (+117) . . How to do a wild type simulation
- 19:29, 16 November 2009 (diff | hist) . . (+1,812) . . N How to do a wild type simulation (New page: <b>How to do a wild type simulation</b><br> <br> OptFlux allows the user to perform a simulation of the wild-type strain, i.e. of the model with no genetic modifications.<br> <br> Access t...)
- 19:26, 16 November 2009 (diff | hist) . . (-5) . . HowTos
- 19:26, 16 November 2009 (diff | hist) . . (-10) . . How to export a model to CD SBML (with results)
- 19:25, 16 November 2009 (diff | hist) . . (+796) . . N How to export a model to CD SBML (with results) (New page: <b>How to export models to CD SBML (with results)</b><br> <br> You can access the "Export to CellDesigner" option under the "Project -> Export" menu.<br> <div style="display: block; tex...)
- 19:24, 16 November 2009 (diff | hist) . . (+674) . . N How to load a CD for visualization (New page: <b>How to load a CD for visualization<br> <br> </b>You can access the "Load CD for visualization" option under the "Project -> Load" menu or right clicking on the project icon in the cl...) (current)
- 19:14, 16 November 2009 (diff | hist) . . (+1) . . HowTos
- 19:14, 16 November 2009 (diff | hist) . . (+6) . . HowTos
- 19:14, 16 November 2009 (diff | hist) . . (-4) . . HowTos
- 19:13, 16 November 2009 (diff | hist) . . (0) . . HowTos
- 19:13, 16 November 2009 (diff | hist) . . (+383) . . N Interaction with Cell Designer (New page: OptFlux provides features that allow a richer interaction with the Cell Designer (CD) application. Currently, the main features allow users to load a SBML file created in CD to visualize a...)
- 19:12, 16 November 2009 (diff | hist) . . (-5) . . HowTos
- 19:02, 16 November 2009 (diff | hist) . . (-5) . . How to export models to SBML
- 19:02, 16 November 2009 (diff | hist) . . (-15) . . How to export models to SBML
- 19:01, 16 November 2009 (diff | hist) . . (+854) . . N How to export models to SBML (New page: <b>How to export models to SBML</b><br> <br> Models can be exported to the SBML format. To know more about the SBML format check http://www.sbml.org.<br> <br> You can access the "Export 2 ...)
- 19:00, 16 November 2009 (diff | hist) . . (-6) . . HowTos
- 19:00, 16 November 2009 (diff | hist) . . (-10) . . How to save and load projects
- 19:00, 16 November 2009 (diff | hist) . . (+1,111) . . N How to save and load projects (New page: <b>How to save and load projects</b><br> <br> OptFlux allows projects to be saved and loaded in a binary format. This feature is useful to save all operations done over a model in a given ...)
- 18:58, 16 November 2009 (diff | hist) . . (-4) . . HowTos
- 18:57, 16 November 2009 (diff | hist) . . (+2,427) . . N How to create a new model/project from text files (New page: <b>How to create a new model/project from text files</b><br> <br> In OptFlux, metabolic models are the basis for all the work. The concept of Project gathers all data generated for a given...)
- 18:56, 16 November 2009 (diff | hist) . . (+1) . . HowTos
- 18:56, 16 November 2009 (diff | hist) . . (-7) . . HowTos
- 18:55, 16 November 2009 (diff | hist) . . (-31) . . How to create a new model/project from SBML
- 18:55, 16 November 2009 (diff | hist) . . (-670) . . How to create a new model/project from SBML
- 18:52, 16 November 2009 (diff | hist) . . (+3,870) . . N How to create a new model/project from SBML (New page: <b> <div style="display: block; text-align: left;"> <div style="display: block; text-align: left;"><a href="http://sites.google.com/site/optfluxhowtos/howtos/1/Step2NewProjectSBML.png?attr...)
- 18:48, 16 November 2009 (diff | hist) . . (+4) . . HowTos
- 18:47, 16 November 2009 (diff | hist) . . (-9) . . HowTos
- 18:46, 16 November 2009 (diff | hist) . . (+1,103) . . HowTos
- 18:05, 16 November 2009 (diff | hist) . . (+17) . . N HowTos (New page: '''HowTos Page''')
- 21:38, 16 July 2009 (diff | hist) . . (+35) . . MediaWiki:Sidebar
- 08:04, 22 April 2009 (diff | hist) . . (+605) . . Downloads
- 15:43, 18 April 2009 (diff | hist) . . (+111) . . Downloads
- 11:42, 3 April 2009 (diff | hist) . . (+143) . . CaseStudy
- 11:39, 3 April 2009 (diff | hist) . . (0) . . N File:Pyruvate metabolism.xml (current)
- 11:38, 3 April 2009 (diff | hist) . . (+18) . . CaseStudy
- 11:37, 3 April 2009 (diff | hist) . . (-6) . . CaseStudy
- 11:37, 3 April 2009 (diff | hist) . . (+21) . . CaseStudy
- 11:30, 3 April 2009 (diff | hist) . . (+44) . . N File:Ecoli.zip (Example files for E.coli - 2003 Reed's model) (current)
- 11:25, 3 April 2009 (diff | hist) . . (+25) . . N CaseStudy (New page: 2003 Reed's E. coli files)
- 11:20, 3 April 2009 (diff | hist) . . (+26) . . MediaWiki:Sidebar
- 19:39, 11 March 2009 (diff | hist) . . (+196) . . Optflux:About
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