From Optflux
- 19:10, 27 May 2014 (diff | hist) . . (+1) . . Layout:Mode (→Zooming) (current)
- 19:09, 27 May 2014 (diff | hist) . . (+9) . . Layout:Mode (→Zooming)
- 19:07, 27 May 2014 (diff | hist) . . (+8) . . Layout:Mode
- 19:06, 27 May 2014 (diff | hist) . . (+4) . . Layout:Mode
- 19:06, 27 May 2014 (diff | hist) . . (+54) . . Layout:Mode (→Navigating draggin and zoom)
- 19:05, 27 May 2014 (diff | hist) . . (+1) . . Layout:Mode (→Navigating draggin and zoom)
- 19:04, 27 May 2014 (diff | hist) . . (+318) . . Layout:Mode (→Navigating draggin and zoom)
- 19:03, 27 May 2014 (diff | hist) . . (0) . . N File:Preferences2.png (current)
- 19:02, 27 May 2014 (diff | hist) . . (0) . . N File:Preferences.png (current)
- 19:00, 27 May 2014 (diff | hist) . . (+180) . . Layout:Mode (→Navigating draggin and zoom)
- 18:59, 27 May 2014 (diff | hist) . . (+373) . . Layout:Mode (→Navigating draggin and zoom)
- 18:58, 27 May 2014 (diff | hist) . . (0) . . N File:R highlight.png (current)
- 18:57, 27 May 2014 (diff | hist) . . (0) . . N File:M highlight.png (current)
- 18:55, 27 May 2014 (diff | hist) . . (+365) . . Layout:Mode
- 18:50, 27 May 2014 (diff | hist) . . (+111) . . Layout:Mode
- 18:49, 27 May 2014 (diff | hist) . . (+6) . . OptFlux3:METAVIZ (→Visualizing and editing a layout) (current)
- 12:48, 27 May 2014 (diff | hist) . . (+39) . . N Layout:Mode (Created page with "{{DISPLAYTITLE: Navigating the layout}}")
- 12:47, 27 May 2014 (diff | hist) . . (+2) . . OptFlux3:METAVIZ (→Visualizing and editing a layout)
- 12:47, 27 May 2014 (diff | hist) . . (+44) . . OptFlux3:METAVIZ (→Visualizing and editing a layout)
- 16:38, 18 March 2014 (diff | hist) . . (0) . . File:Layout Export.png (Bnoronha uploaded a new version of "File:Layout Export.png") (current)
- 16:37, 18 March 2014 (diff | hist) . . (+868) . . N Layout:Export (Created page with "{{DISPLAYTITLE: Exporting a Layout}} To export a layout the user must click on the button <i>"Export Current Layout"</i> on the side panel of the visualizer. [[Image : Layo...") (current)
- 16:34, 18 March 2014 (diff | hist) . . (0) . . N File:Layout Export.png
- 16:21, 18 March 2014 (diff | hist) . . (+41) . . OptFlux3:METAVIZ (→Exporting a layout)
- 16:12, 18 March 2014 (diff | hist) . . (+16) . . Layout:Overlaps (→Simulation Comparison) (current)
- 16:12, 18 March 2014 (diff | hist) . . (+24) . . Layout:Overlaps (→Simulation Comparison)
- 16:11, 18 March 2014 (diff | hist) . . (+1,697) . . Layout:Overlaps (→Simulation Comparison)
- 16:11, 18 March 2014 (diff | hist) . . (0) . . N File:Comp 2.png (current)
- 16:08, 18 March 2014 (diff | hist) . . (0) . . N File:Comp 3.png (current)
- 16:04, 18 March 2014 (diff | hist) . . (0) . . N File:Comp 1.png (current)
- 15:41, 18 March 2014 (diff | hist) . . (+101) . . Layout:Overlaps (→Simulation overlap)
- 15:40, 18 March 2014 (diff | hist) . . (-3) . . Layout:Overlaps (→Elementary Flux Mode)
- 15:40, 18 March 2014 (diff | hist) . . (+1,043) . . Layout:Overlaps (→Elementary Flux Mode)
- 15:39, 18 March 2014 (diff | hist) . . (0) . . N File:C4 EFMvis2.png (current)
- 14:49, 18 March 2014 (diff | hist) . . (+61) . . Layout:Overlaps (→Overlaps)
- 14:41, 18 March 2014 (diff | hist) . . (+9) . . Layout:Overlaps (→Simulation overlap)
- 14:41, 18 March 2014 (diff | hist) . . (+20) . . Layout:Overlaps (→Simulation overlap)
- 14:40, 18 March 2014 (diff | hist) . . (+885) . . Layout:Overlaps (→Simulation overlap)
- 14:40, 18 March 2014 (diff | hist) . . (0) . . N File:C4 overlaps.png (current)
- 14:37, 18 March 2014 (diff | hist) . . (0) . . N File:GeneticConditions.png (current)
- 14:31, 18 March 2014 (diff | hist) . . (+106) . . Layout:Overlaps (→Overlaps)
- 12:13, 17 March 2014 (diff | hist) . . (-1) . . Layout:Overlaps
- 12:13, 17 March 2014 (diff | hist) . . (-1) . . Layout:Overlaps
- 12:12, 17 March 2014 (diff | hist) . . (+16) . . Layout:Overlaps
- 12:12, 17 March 2014 (diff | hist) . . (+133) . . Layout:Overlaps (→Visual Filters)
- 12:11, 17 March 2014 (diff | hist) . . (+63) . . Layout:Overlaps
- 12:10, 17 March 2014 (diff | hist) . . (+316) . . N Layout:Overlaps (Created page with "The visualization plugin has available some filters and overlaps that will alow the user to get more information about the network and interpret results from OptFlux operation...")
- 09:12, 17 March 2014 (diff | hist) . . (+49) . . OptFlux3:METAVIZ (→Visualizing and editing a layout)
- 14:02, 13 March 2014 (diff | hist) . . (+282) . . Layout:Edition (→Delete Reaction)
- 13:58, 13 March 2014 (diff | hist) . . (+342) . . Layout:Edition (→Merge/Replicate Reaction Node)
- 13:56, 13 March 2014 (diff | hist) . . (+235) . . Layout:Edition (→Merge/Replicate Node)
- 13:56, 13 March 2014 (diff | hist) . . (0) . . File:C4 replicatemergerReaction.png (Bnoronha uploaded a new version of "File:C4 replicatemergerReaction.png") (current)
- 13:53, 13 March 2014 (diff | hist) . . (0) . . N File:C4 replicatemergerReaction.png
- 13:48, 13 March 2014 (diff | hist) . . (+585) . . Layout:Edition (→Merge/Replicate Node)
- 11:54, 13 March 2014 (diff | hist) . . (+4) . . Layout:Edition (→Merge/Replicate Node)
- 11:53, 13 March 2014 (diff | hist) . . (+36) . . Layout:Edition (→Merge/Replicate Node)
- 11:53, 13 March 2014 (diff | hist) . . (+249) . . Layout:Edition (→Merge/Replicate Node)
- 11:51, 13 March 2014 (diff | hist) . . (0) . . File:MergeReplicate.png (Bnoronha uploaded a new version of "File:MergeReplicate.png") (current)
- 11:50, 13 March 2014 (diff | hist) . . (0) . . N File:MergeReplicate.png
- 11:32, 13 March 2014 (diff | hist) . . (-27) . . Layout:Edition
- 11:32, 13 March 2014 (diff | hist) . . (+36) . . Layout:Edition
- 11:31, 13 March 2014 (diff | hist) . . (+12) . . Layout:Edition (→Dragging Fix/Unfix)
- 11:31, 13 March 2014 (diff | hist) . . (+8) . . Layout:Edition (→Dragging Fix/Unfix)
- 11:30, 13 March 2014 (diff | hist) . . (+966) . . N Layout:Edition (Created page with "There are some actions that can be performed to edit the layouts loaded in OptFlux. Here they will be detailed. == Dragging Fix/Unfix == The visualization uses a default alg...")
- 11:30, 13 March 2014 (diff | hist) . . (0) . . N File:DRAG.png (current)
- 11:27, 13 March 2014 (diff | hist) . . (0) . . N File:FixUnfix.png (current)
- 11:01, 13 March 2014 (diff | hist) . . (+39) . . OptFlux3:METAVIZ (→Visualizing and editing a layout)
- 18:35, 11 March 2014 (diff | hist) . . (+191) . . Layout:GUI (current)
- 18:35, 11 March 2014 (diff | hist) . . (0) . . N File:ZoomPanel.png (current)
- 18:33, 11 March 2014 (diff | hist) . . (+567) . . Layout:GUI
- 18:31, 11 March 2014 (diff | hist) . . (0) . . N File:InformationPanel.png (current)
- 18:27, 11 March 2014 (diff | hist) . . (+462) . . Layout:GUI
- 18:25, 11 March 2014 (diff | hist) . . (0) . . N File:OverlapsPanel.png (current)
- 18:21, 11 March 2014 (diff | hist) . . (+314) . . Layout:GUI (→Filters Panel)
- 18:20, 11 March 2014 (diff | hist) . . (0) . . N File:DefaultFilters.png (current)
- 18:18, 11 March 2014 (diff | hist) . . (-46) . . Layout:GUI
- 18:17, 11 March 2014 (diff | hist) . . (+21) . . Layout:GUI
- 18:16, 11 March 2014 (diff | hist) . . (+279) . . Layout:GUI
- 18:14, 11 March 2014 (diff | hist) . . (+347) . . Layout:GUI
- 17:55, 11 March 2014 (diff | hist) . . (+31) . . Layout:GUI
- 17:52, 11 March 2014 (diff | hist) . . (+84) . . N Layout:GUI (Created page with "{{DISPLAYTITLE: Visualization User Interface}} <br> Image: VisUserInterface.png")
- 17:43, 11 March 2014 (diff | hist) . . (0) . . N File:VisUserInterface.png (current)
- 17:35, 11 March 2014 (diff | hist) . . (-6) . . OptFlux3:METAVIZ (→Creating a layout)
- 17:35, 11 March 2014 (diff | hist) . . (-3) . . OptFlux3:METAVIZ (→Creating a layout)
- 17:35, 11 March 2014 (diff | hist) . . (-4) . . OptFlux3:METAVIZ (→Visualizing and editing a layout)
- 17:35, 11 March 2014 (diff | hist) . . (+47) . . OptFlux3:METAVIZ (→Visualizing and editing a layout)
- 17:25, 11 March 2014 (diff | hist) . . (+452) . . Create:Layout (current)
- 17:21, 11 March 2014 (diff | hist) . . (-59) . . HowTos:OptFlux3 (→Plugins)
- 12:07, 27 February 2014 (diff | hist) . . (-26) . . Create:Layout
- 12:06, 27 February 2014 (diff | hist) . . (+1) . . Create:Layout
- 12:06, 27 February 2014 (diff | hist) . . (+98) . . Create:Layout
- 12:05, 27 February 2014 (diff | hist) . . (0) . . N File:GenerateLayoutGUIpng.png (current)
- 12:03, 27 February 2014 (diff | hist) . . (+217) . . N Create:Layout (Created page with "{{DISPLAYTITLE: Create a Layout}} The visualization plugin also provides tools to generate layouts. The user can access this functionality through the Create menu: <br><br> ...")
- 12:03, 27 February 2014 (diff | hist) . . (0) . . N File:Create layout menu.png (current)
- 11:51, 27 February 2014 (diff | hist) . . (+448) . . Layout:Import (→Importing a KGML Layout) (current)
- 11:51, 27 February 2014 (diff | hist) . . (0) . . N File:ImportKGMLLayoutGUI.png (current)
- 11:47, 27 February 2014 (diff | hist) . . (+110) . . Layout:Import (→Importing a KGML Layout)
- 11:46, 27 February 2014 (diff | hist) . . (0) . . N File:ImportKGML.png (current)
- 17:04, 21 November 2013 (diff | hist) . . (-2) . . Layout:Import (→File Definitions)
- 17:04, 21 November 2013 (diff | hist) . . (-5) . . Layout:Import (→File Definitions)
- 17:00, 21 November 2013 (diff | hist) . . (+27) . . Layout:Import
- 16:59, 21 November 2013 (diff | hist) . . (+193) . . Layout:Import
- 16:58, 21 November 2013 (diff | hist) . . (0) . . N File:Xgmmledge.png (current)
- 16:58, 21 November 2013 (diff | hist) . . (0) . . N File:Xgmmlmnode.png (current)
- 16:57, 21 November 2013 (diff | hist) . . (0) . . N File:Xgmmlrnode.png (current)
- 16:53, 21 November 2013 (diff | hist) . . (+54) . . Layout:Import (→File Definitions)
- 16:52, 21 November 2013 (diff | hist) . . (-2) . . Layout:Import (→File Definitions)
- 16:50, 21 November 2013 (diff | hist) . . (+648) . . Layout:Import (→File Definitions)
- 16:47, 21 November 2013 (diff | hist) . . (-7) . . Layout:Import (→File Definitions)
- 16:47, 21 November 2013 (diff | hist) . . (+687) . . Layout:Import (→File Definitions)
- 15:15, 11 November 2013 (diff | hist) . . (+501) . . Layout:Import (→File Definitions)
- 15:04, 11 November 2013 (diff | hist) . . (+74) . . Layout:Import (→File Definitions)
- 15:01, 11 November 2013 (diff | hist) . . (+2) . . Layout:Import (→File Definitions)
- 14:59, 11 November 2013 (diff | hist) . . (-4) . . Layout:Import (→File Definitions)
- 14:59, 11 November 2013 (diff | hist) . . (+749) . . Layout:Import (→File Definitions)
- 13:58, 11 November 2013 (diff | hist) . . (+386) . . Layout:Import (→File Definitions)
- 14:56, 5 November 2013 (diff | hist) . . (-16) . . Layout:Import
- 14:44, 5 November 2013 (diff | hist) . . (+59) . . Layout:Import
- 14:32, 5 November 2013 (diff | hist) . . (+711) . . Layout:Import
- 14:29, 5 November 2013 (diff | hist) . . (0) . . N File:ReactionMap.png (current)
- 14:19, 5 November 2013 (diff | hist) . . (0) . . N File:ColumnMap.png (current)
- 14:10, 5 November 2013 (diff | hist) . . (+114) . . Layout:Import
- 14:09, 5 November 2013 (diff | hist) . . (0) . . N File:Vis import GUI.png (current)
- 13:50, 5 November 2013 (diff | hist) . . (+51) . . Layout:Import
- 13:50, 5 November 2013 (diff | hist) . . (0) . . N File:Vis ImportLayout.png (current)
- 13:33, 5 November 2013 (diff | hist) . . (+205) . . N Layout:Import (Created page with "{{DISPLAYTITLE: Importing a Layout}} There are 2 major operations for layout importation in OptFlux. The default import operation allows importing layouts from XGMML, COBRA, ...")
- 13:32, 5 November 2013 (diff | hist) . . (+80) . . OptFlux3:METAVIZ
- 13:31, 5 November 2013 (diff | hist) . . (+22) . . OptFlux3:METAVIZ (→Creating a layout)
- 12:05, 5 November 2013 (diff | hist) . . (+171) . . OptFlux3:METAVIZ (→Creating a layout)
- 11:45, 5 November 2013 (diff | hist) . . (+44) . . OptFlux3:METAVIZ
- 11:44, 5 November 2013 (diff | hist) . . (0) . . N File:Clipboard layouts.png (current)
- 11:40, 5 November 2013 (diff | hist) . . (+82) . . OptFlux3:METAVIZ
- 11:34, 5 November 2013 (diff | hist) . . (+493) . . N OptFlux3:METAVIZ (Created page with "{{DISPLAYTITLE: Metabolic network visualization plugin}} The visualization plugin now comes with the default plugins of OptFlux, so you just need to download the most recent ...")
- 15:54, 29 October 2013 (diff | hist) . . (+63) . . HowTos:OptFlux3 (→Plugins)
- 04:26, 8 February 2013 (diff | hist) . . (-1) . . OptFlux3:Evolutionary (→Optimization dialog and preferences) (current)
- 04:25, 8 February 2013 (diff | hist) . . (+6) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:25, 8 February 2013 (diff | hist) . . (+1) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:25, 8 February 2013 (diff | hist) . . (+13) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:24, 8 February 2013 (diff | hist) . . (0) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:24, 8 February 2013 (diff | hist) . . (-3) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:23, 8 February 2013 (diff | hist) . . (0) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:22, 8 February 2013 (diff | hist) . . (+4) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:22, 8 February 2013 (diff | hist) . . (-1) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:22, 8 February 2013 (diff | hist) . . (+1) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:21, 8 February 2013 (diff | hist) . . (0) . . N File:Sim view.png (current)
- 04:21, 8 February 2013 (diff | hist) . . (+28) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:18, 8 February 2013 (diff | hist) . . (-4) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:17, 8 February 2013 (diff | hist) . . (0) . . N File:Clip opt.png (current)
- 04:17, 8 February 2013 (diff | hist) . . (0) . . N File:Addtosim.png (current)
- 04:17, 8 February 2013 (diff | hist) . . (+1,034) . . OptFlux3:Evolutionary (→Analysing optimization solutions)
- 04:05, 8 February 2013 (diff | hist) . . (+4) . . OptFlux3:Evolutionary (→Execution and options)
- 04:04, 8 February 2013 (diff | hist) . . (+2) . . OptFlux3:Evolutionary (→Execution and options)
- 04:02, 8 February 2013 (diff | hist) . . (0) . . N File:Opt view.png (current)
- 04:01, 8 February 2013 (diff | hist) . . (0) . . N File:Clip.png (current)
- 04:00, 8 February 2013 (diff | hist) . . (+215) . . OptFlux3:Evolutionary (→Performing strain optimization in OptFlux)
- 03:57, 8 February 2013 (diff | hist) . . (+482) . . OptFlux3:Evolutionary (→Execution and options)
- 03:54, 8 February 2013 (diff | hist) . . (0) . . N File:Run multi.png (current)
- 03:53, 8 February 2013 (diff | hist) . . (-32) . . OptFlux3:Evolutionary (→Execution and options)
- 03:53, 8 February 2013 (diff | hist) . . (0) . . N File:Run single.png (current)
- 03:53, 8 February 2013 (diff | hist) . . (+111) . . OptFlux3:Evolutionary
- 03:50, 8 February 2013 (diff | hist) . . (+161) . . OptFlux3:Evolutionary
- 03:47, 8 February 2013 (diff | hist) . . (+10) . . OptFlux3:Evolutionary (→Optimization dialog and preferences)
- 03:47, 8 February 2013 (diff | hist) . . (+2) . . OptFlux3:Evolutionary (→Optimization dialog and preferences)
- 03:46, 8 February 2013 (diff | hist) . . (+36) . . OptFlux3:Evolutionary (→Optimization dialog and preferences)
- 03:45, 8 February 2013 (diff | hist) . . (+1,370) . . OptFlux3:Evolutionary (→Optimization dialog and preferences)
- 03:34, 8 February 2013 (diff | hist) . . (0) . . OptFlux3:Evolutionary (→Optimization dialog and preferences)
- 03:34, 8 February 2013 (diff | hist) . . (+648) . . OptFlux3:Evolutionary (→Performing strain optimization in OptFlux)
- 03:28, 8 February 2013 (diff | hist) . . (+6) . . OptFlux3:Evolutionary (→Performing strain optimization in OptFlux)
- 03:27, 8 February 2013 (diff | hist) . . (0) . . N File:Maindialog.png (current)
- 03:26, 8 February 2013 (diff | hist) . . (0) . . N File:Menu opt.png (current)
- 03:26, 8 February 2013 (diff | hist) . . (+4) . . OptFlux3:Evolutionary (→Performing strain optimization in OptFlux)
- 03:26, 8 February 2013 (diff | hist) . . (+225) . . OptFlux3:Evolutionary
- 03:15, 8 February 2013 (diff | hist) . . (-14) . . OptFlux3:Evolutionary
- 03:12, 8 February 2013 (diff | hist) . . (+2,485) . . OptFlux3:Evolutionary (→Methods)
- 03:09, 8 February 2013 (diff | hist) . . (+28) . . OptFlux3:Evolutionary (→Solution Simplification)
- 03:07, 8 February 2013 (diff | hist) . . (+1) . . OptFlux3:Evolutionary (→Solution Simplification)
- 03:02, 8 February 2013 (diff | hist) . . (+731) . . OptFlux3:Evolutionary (→Methods)
- 02:59, 8 February 2013 (diff | hist) . . (-19) . . OptFlux3:Evolutionary (→Methods)
- 02:58, 8 February 2013 (diff | hist) . . (0) . . OptFlux3:Evolutionary (→Methods)
- 02:58, 8 February 2013 (diff | hist) . . (+6) . . OptFlux3:Evolutionary (→Methods)
- 02:57, 8 February 2013 (diff | hist) . . (0) . . N File:Formulation.png (current)
- 02:57, 8 February 2013 (diff | hist) . . (-6) . . OptFlux3:Evolutionary (→Methods)
- 02:57, 8 February 2013 (diff | hist) . . (-6) . . OptFlux3:Evolutionary (→Methods)
- 02:57, 8 February 2013 (diff | hist) . . (+57) . . OptFlux3:Evolutionary (→Methods)
- 02:54, 8 February 2013 (diff | hist) . . (+373) . . OptFlux3:Evolutionary
- 02:53, 8 February 2013 (diff | hist) . . (-380) . . File:Framework.png (Blanked the page) (current)
- 02:53, 8 February 2013 (diff | hist) . . (+380) . . File:Framework.png
- 02:51, 8 February 2013 (diff | hist) . . (0) . . OptFlux3:Evolutionary (→Framework description)
- 02:50, 8 February 2013 (diff | hist) . . (+300) . . OptFlux3:Evolutionary (→Framework description)
- 02:44, 8 February 2013 (diff | hist) . . (-22) . . OptFlux3:Evolutionary (→The Archive Manager)
- 02:43, 8 February 2013 (diff | hist) . . (+251) . . OptFlux3:Evolutionary (→Solution Simplification)
- 02:37, 8 February 2013 (diff | hist) . . (-6) . . OptFlux3:Evolutionary (→The Archive Manager)
- 02:27, 8 February 2013 (diff | hist) . . (+655) . . OptFlux3:Evolutionary (→Framework description)
- 02:25, 8 February 2013 (diff | hist) . . (+5) . . OptFlux3:Evolutionary (→Framework description)
- 02:20, 8 February 2013 (diff | hist) . . (+12) . . OptFlux3:Evolutionary (→Framework description)
- 02:19, 8 February 2013 (diff | hist) . . (+28) . . HowTos:OptFlux3
- 02:18, 8 February 2013 (diff | hist) . . (0) . . N File:Framework.png
- 02:13, 8 February 2013 (diff | hist) . . (+375) . . OptFlux3:Evolutionary
- 01:19, 8 February 2013 (diff | hist) . . (+47) . . N OptFlux3:Evolutionary (Created page with "__TOC__ ===Evolutionary Strain Optimization===")
- 18:56, 24 January 2013 (diff | hist) . . (-476) . . OptFlux3:OPT:Critical (current)
- 18:56, 24 January 2013 (diff | hist) . . (0) . . N File:CriticalClip.png (current)
- 18:54, 24 January 2013 (diff | hist) . . (0) . . File:CriticalGUI.png (Bnoronha uploaded a new version of "File:CriticalGUI.png") (current)
- 18:52, 24 January 2013 (diff | hist) . . (0) . . N File:CriticalGUI.png
- 18:51, 24 January 2013 (diff | hist) . . (0) . . N File:CriticalMenu.png (current)
- 15:45, 24 January 2013 (diff | hist) . . (+489) . . OptFlux3:SMP (current)
- 15:44, 24 January 2013 (diff | hist) . . (0) . . N File:SimpliClip.png (current)
- 15:43, 24 January 2013 (diff | hist) . . (0) . . N File:SimplifGUI.png (current)
- 15:42, 24 January 2013 (diff | hist) . . (0) . . N File:SimplificationMENU.png (current)
- 15:40, 24 January 2013 (diff | hist) . . (+231) . . OptFlux3:SMP
- 12:50, 21 January 2013 (diff | hist) . . (+4) . . OptFlux3:Biovisualizer (current)
- 12:50, 21 January 2013 (diff | hist) . . (+8) . . OptFlux3:Biovisualizer
- 12:49, 21 January 2013 (diff | hist) . . (+152) . . OptFlux3:Biovisualizer
- 12:47, 21 January 2013 (diff | hist) . . (+1,086) . . N OptFlux3:Biovisualizer (Created page with "{{DISPLAYTITLE: Model Visualizer : BioVisualizer Core}} Biovisualizer Core provides a visual representation of a metabolic model. The network is represented as a graph, where...")
- 12:43, 21 January 2013 (diff | hist) . . (0) . . N File:Visualizer.png (current)
- 12:37, 21 January 2013 (diff | hist) . . (0) . . N File:Ilayout4.jpg (current)
- 12:33, 21 January 2013 (diff | hist) . . (-5) . . OptFlux3:CYT (current)
- 12:33, 21 January 2013 (diff | hist) . . (+806) . . OptFlux3:CYT
- 12:32, 21 January 2013 (diff | hist) . . (0) . . N File:XgmmlExportGUI.png (current)
- 12:32, 21 January 2013 (diff | hist) . . (0) . . N File:XgmmlExportMenu.png (current)
- 12:31, 21 January 2013 (diff | hist) . . (0) . . N File:XgmmlWiz2.png (current)
- 12:30, 21 January 2013 (diff | hist) . . (0) . . N File:XgmmlWiz1.png (current)
- 12:30, 21 January 2013 (diff | hist) . . (0) . . N File:XgmmlImportMenu.png (current)
- 12:17, 21 January 2013 (diff | hist) . . (+226) . . OptFlux3:CDG (current)
- 12:17, 21 January 2013 (diff | hist) . . (0) . . N File:ExportCDGUI.png (current)
- 12:16, 21 January 2013 (diff | hist) . . (0) . . N File:ExportCDmenu.png (current)
- 12:13, 21 January 2013 (diff | hist) . . (+260) . . OptFlux3:CDG
- 12:12, 21 January 2013 (diff | hist) . . (0) . . N File:ImportCDGui.png (current)
- 12:11, 21 January 2013 (diff | hist) . . (0) . . N File:ImportCDmenu.png (current)
- 12:03, 21 January 2013 (diff | hist) . . (+12) . . OptFlux3:CDG
- 12:02, 21 January 2013 (diff | hist) . . (+582) . . OptFlux3:CDG
- 11:59, 21 January 2013 (diff | hist) . . (0) . . N File:CDWizard.png (current)
- 11:54, 21 January 2013 (diff | hist) . . (+189) . . N OptFlux3:CYT (Created page with "{{DISPLAYTITLE: XGMML plugin}} OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Biovisual...")
- 11:53, 21 January 2013 (diff | hist) . . (+196) . . N OptFlux3:CDG (Created page with "{{DISPLAYTITLE: CellDesigner plugin}} OptFlux 3 has a series of packages that give the capability to visualize a metabolic network. You can know more about them [[OptFlux3:Bi...")
- 11:49, 21 January 2013 (diff | hist) . . (+26) . . HowTos:OptFlux3 (→Plugins)
- 19:10, 13 December 2012 (diff | hist) . . (+458) . . OptFlux3:SIM:EquivalentFluxes (current)
- 19:10, 13 December 2012 (diff | hist) . . (0) . . N File:EqFclip.png (current)
- 19:09, 13 December 2012 (diff | hist) . . (0) . . N File:EqFGUI.png (current)
- 19:09, 13 December 2012 (diff | hist) . . (0) . . N File:EqFmenu.png (current)
- 19:03, 13 December 2012 (diff | hist) . . (+372) . . OptFlux3:SIM:ZeroFluxStruc (current)
- 19:03, 13 December 2012 (diff | hist) . . (0) . . N File:StrZFClip.png (current)
- 19:03, 13 December 2012 (diff | hist) . . (0) . . N File:StrZFGUI.png (current)
- 19:02, 13 December 2012 (diff | hist) . . (0) . . N File:StrZFmenu.png (current)
- 18:55, 13 December 2012 (diff | hist) . . (-237) . . OptFlux3:SIM:VarPlot (current)
- 18:55, 13 December 2012 (diff | hist) . . (0) . . N File:ExamplePlot.jpg (current)
- 18:55, 13 December 2012 (diff | hist) . . (0) . . N File:FvaPlotClip.png (current)
- 18:54, 13 December 2012 (diff | hist) . . (0) . . N File:FVaPlotGUI.png (current)
- 18:54, 13 December 2012 (diff | hist) . . (0) . . N File:FvaPlotMenu.png (current)
- 18:45, 13 December 2012 (diff | hist) . . (+6) . . OptFlux3:SIM:VarPlot
- 18:44, 13 December 2012 (diff | hist) . . (+543) . . OptFlux3:SIM:ZeroFluxFVA (current)
- 18:43, 13 December 2012 (diff | hist) . . (0) . . N File:FvaZFclip.png (current)
- 18:43, 13 December 2012 (diff | hist) . . (0) . . N File:FvaZFgui.png (current)
- 18:41, 13 December 2012 (diff | hist) . . (0) . . N File:FvaZFmenu.png (current)
- 18:35, 13 December 2012 (diff | hist) . . (-323) . . OptFlux3:SIM:FluxLim (current)
- 18:35, 13 December 2012 (diff | hist) . . (0) . . N File:FlClip.png (current)
- 18:35, 13 December 2012 (diff | hist) . . (0) . . N File:FLGUI.png (current)
- 18:34, 13 December 2012 (diff | hist) . . (0) . . N File:FLmenu.png (current)
- 18:20, 13 December 2012 (diff | hist) . . (-1) . . Table format Reader (current)
- 18:18, 13 December 2012 (diff | hist) . . (+45) . . OptFlux3:MR (current)
- 18:16, 13 December 2012 (diff | hist) . . (+564) . . Create Environmental conditions (current)
- 18:15, 13 December 2012 (diff | hist) . . (0) . . N File:Eclip.png (current)
- 18:12, 13 December 2012 (diff | hist) . . (0) . . N File:Ec2.png (current)
- 18:08, 13 December 2012 (diff | hist) . . (+320) . . N Create Environmental conditions (Created page with "Environmental conditions (ECs) can be used to define the values of uptake fluxes, i.e. the rates at which metabolites are consumed and thus can be used to define media for the...")
- 18:08, 13 December 2012 (diff | hist) . . (0) . . N File:ECmenu.png (current)
- 18:03, 13 December 2012 (diff | hist) . . (+38) . . HowTos:OptFlux3
- 11:35, 13 December 2012 (diff | hist) . . (+8) . . HowTos:OptFlux3 (→Create)
- 11:34, 13 December 2012 (diff | hist) . . (+3) . . HowTos:OptFlux3 (→ole)
- 11:33, 13 December 2012 (diff | hist) . . (-24) . . HowTos:OptFlux3 (→Project Creation)
- 11:33, 13 December 2012 (diff | hist) . . (+36) . . HowTos:OptFlux3
- 19:24, 6 December 2012 (diff | hist) . . (+31) . . HowTos:OptFlux3
- 19:21, 6 December 2012 (diff | hist) . . (+35) . . HowTos:OptFlux3 (→HowTos for OptFlux 3)
- 17:29, 4 December 2012 (diff | hist) . . (+1) . . HowTos:OptFlux3
- 17:29, 4 December 2012 (diff | hist) . . (+41) . . HowTos:OptFlux3
- 17:26, 4 December 2012 (diff | hist) . . (-86) . . CORE:Readers:Drains
- 17:19, 4 December 2012 (diff | hist) . . (+82) . . CORE:Readers:Drains
- 17:18, 4 December 2012 (diff | hist) . . (0) . . N File:BiggRegexp.png (current)
- 17:17, 4 December 2012 (diff | hist) . . (0) . . N File:Drainsheuristic.png (current)
- 17:17, 4 December 2012 (diff | hist) . . (0) . . N File:DontDoDrains.png (current)
- 17:16, 4 December 2012 (diff | hist) . . (+1,835) . . N CORE:Readers:Drains (Created page with "In order to be possible to make simulations with a model there must be an "unbalance", where reactants enter the network and product are produced. This extra cellular infomati...")
- 16:35, 4 December 2012 (diff | hist) . . (+842) . . N Table format Reader (Created page with "The table format reader allows the user to load models in TSV and CSV file formats.<br> You can check for examples in Case Study. <br> It is necessary to give 2 files so t...")
- 16:33, 4 December 2012 (diff | hist) . . (0) . . N File:Tableconfig.png (current)
- 16:30, 4 December 2012 (diff | hist) . . (0) . . N File:TableFiles.png (current)
- 16:25, 4 December 2012 (diff | hist) . . (+8) . . Cell Designer Reader (current)
- 16:25, 4 December 2012 (diff | hist) . . (+37) . . Cell Designer Reader
- 16:24, 4 December 2012 (diff | hist) . . (+231) . . N Cell Designer Reader (Created page with "This reader comes with the cell designer plugin. It's an extension of the SBML Reader, the only difference is that the file has cell designer annotations, allowing OptFlux to ...")
- 16:23, 4 December 2012 (diff | hist) . . (+9) . . OptFlux Readers
- 16:21, 4 December 2012 (diff | hist) . . (+771) . . N Flat Files Reader (Created page with "Flat files reader uses simple text files to build a model. You can check some examples in CaseStudy page. It uses 4 files 3 of which are mandatory. * <b>Reactions file</...") (current)
- 16:19, 4 December 2012 (diff | hist) . . (0) . . N File:Flatconfig.png (current)
- 16:17, 4 December 2012 (diff | hist) . . (0) . . N File:Step2flat.png (current)
- 16:08, 4 December 2012 (diff | hist) . . (-51) . . OptFlux3:SIM:UnderOverExpression
- 16:08, 4 December 2012 (diff | hist) . . (0) . . OptFlux3:SIM:UnderOverExpression
- 16:08, 4 December 2012 (diff | hist) . . (0) . . OptFlux3:SIM:UnderOverExpression
- 16:02, 4 December 2012 (diff | hist) . . (-3) . . OptFlux3:MR
- 16:02, 4 December 2012 (diff | hist) . . (+343) . . OptFlux3:MR
- 16:01, 4 December 2012 (diff | hist) . . (0) . . N File:Step2DB.png (current)
- 16:00, 4 December 2012 (diff | hist) . . (0) . . File:Step4biomass.png (Bnoronha uploaded a new version of "File:Step4biomass.png") (current)
- 15:58, 4 December 2012 (diff | hist) . . (+340) . . N OptFlux3:MR (Created page with "One alternative option for creating a project is to import the model from the OptFlux’s repository. This is an option that guarantees the import of models collected from!lit...")
- 15:54, 4 December 2012 (diff | hist) . . (+7) . . OptFlux3:CORE:NewProject
- 15:53, 4 December 2012 (diff | hist) . . (+38) . . OptFlux Readers
- 15:52, 4 December 2012 (diff | hist) . . (+10) . . OptFlux Readers
- 15:52, 4 December 2012 (diff | hist) . . (+44) . . SBML Reader
- 15:50, 4 December 2012 (diff | hist) . . (+35) . . OptFlux3:SIM:Knockouts
- 15:50, 4 December 2012 (diff | hist) . . (+305) . . N SBML Reader (Created page with "SBML is a XML dialect created for the represention of Systems Biology models. Check the site www.sbml.org to know more. <br><br> SBML Reader only needs the sbml file to build ...")
- 15:49, 4 December 2012 (diff | hist) . . (0) . . N File:Step2sbml.png (current)
- 15:46, 4 December 2012 (diff | hist) . . (+73) . . OptFlux3:CORE:NewProject
- 15:44, 4 December 2012 (diff | hist) . . (+258) . . N OptFlux Readers (Created page with "OptFlux uses a set of readers that allow the building of metabolic models. There are several readers implemented each with it's own specifications. *SBML Reader *[[OptFl...")
- 13:57, 4 December 2012 (diff | hist) . . (+165) . . OptFlux3:CORE:NewProject
- 13:57, 4 December 2012 (diff | hist) . . (0) . . N File:Newprojclip.png (current)
- 13:55, 4 December 2012 (diff | hist) . . (0) . . N File:Step4biomass.png
- 13:55, 4 December 2012 (diff | hist) . . (+416) . . OptFlux3:CORE:NewProject
- 13:46, 4 December 2012 (diff | hist) . . (+428) . . OptFlux3:CORE:NewProject
- 13:35, 4 December 2012 (diff | hist) . . (+249) . . OptFlux3:CORE:NewProject
- 13:35, 4 December 2012 (diff | hist) . . (0) . . N File:Wizardstep1.png (current)
- 13:31, 4 December 2012 (diff | hist) . . (+256) . . N OptFlux3:CORE:NewProject (Created page with "To begin the creation of a new project, you have to start the New Project wizard available through the File Menu or the Toolbar. <br><br> Image:Newprojmenu.png <br><br> Yo...")
- 13:31, 4 December 2012 (diff | hist) . . (0) . . N File:Newprojmenu.png (current)
- 12:09, 4 December 2012 (diff | hist) . . (+27) . . HowTos:OptFlux3
- 12:08, 4 December 2012 (diff | hist) . . (-35) . . OptFlux3:SIM:Knockouts
- 12:07, 4 December 2012 (diff | hist) . . (-23) . . OptFlux3:SIM:UnderOverExpression
- 12:06, 4 December 2012 (diff | hist) . . (+64) . . OptFlux3:SIM:UnderOverExpression
- 12:06, 4 December 2012 (diff | hist) . . (0) . . N File:GeneUO01.png (current)
- 12:05, 4 December 2012 (diff | hist) . . (0) . . N File:ReactionUO01.png (current)
- 12:05, 4 December 2012 (diff | hist) . . (+28) . . OptFlux3:SIM:UnderOverExpression
- 12:03, 4 December 2012 (diff | hist) . . (0) . . N File:UOmenu.png (current)
- 12:03, 4 December 2012 (diff | hist) . . (+1,595) . . OptFlux3:SIM:UnderOverExpression
- 11:55, 4 December 2012 (diff | hist) . . (+900) . . N OptFlux3:SIM:UnderOverExpression (Created page with "<b>How to do a over/under expression simulation</b><br> OptFlux allows the simulation of mutants including over/under expression of genes or reactions. The user interface for...")
- 11:45, 4 December 2012 (diff | hist) . . (+76) . . HowTos:OptFlux3 (→HowTos for OptFlux 3)
- 11:44, 4 December 2012 (diff | hist) . . (+3) . . HowTos:OptFlux3
- 11:43, 4 December 2012 (diff | hist) . . (+2) . . HowTos:OptFlux3 (→HowTos for OptFlux 3)
- 11:43, 4 December 2012 (diff | hist) . . (+42) . . HowTos:OptFlux3
- 11:36, 4 December 2012 (diff | hist) . . (+1,752) . . N OptFlux3:SIM:Knockouts (Created page with "OptFlux allows the user to perform a simulation of a mutant strain, i.e. of the model with some genetic modifications, in this case a set of gene or reaction deletions. Acces...")
- 11:35, 4 December 2012 (diff | hist) . . (0) . . N File:ReactionKO1.png (current)
- 11:34, 4 December 2012 (diff | hist) . . (0) . . N File:GeneKO1.png (current)
- 11:32, 4 December 2012 (diff | hist) . . (0) . . N File:Mutantmenu.png (current)
- 11:06, 4 December 2012 (diff | hist) . . (+37) . . OptFlux3:SIM:WildType
- 11:05, 4 December 2012 (diff | hist) . . (0) . . N File:Wildclipboard.png (current)
- 19:25, 29 November 2012 (diff | hist) . . (-33) . . OptFlux3:SIM:WildType
- 19:16, 29 November 2012 (diff | hist) . . (+133) . . OptFlux3:SIM:WildType
- 19:13, 29 November 2012 (diff | hist) . . (0) . . N File:WildType3.png (current)
- 19:12, 29 November 2012 (diff | hist) . . (+760) . . OptFlux3:SIM:WildType
- 19:05, 29 November 2012 (diff | hist) . . (0) . . N File:Wildemnu2.png (current)
- 18:54, 29 November 2012 (diff | hist) . . (0) . . OptFlux3:SIM:WildType
- 18:53, 29 November 2012 (diff | hist) . . (+390) . . OptFlux3:SIM:WildType
- 18:50, 29 November 2012 (diff | hist) . . (0) . . N File:Wildmenu1.png (current)
- 18:42, 29 November 2012 (diff | hist) . . (-21) . . OptFlux3:SIM:WildType
- 18:39, 29 November 2012 (diff | hist) . . (+333) . . N OptFlux3:SIM:WildType (Created page with "<b>How to do a wild type simulation</b><br> <br> OptFlux allows the user to perform a simulation of the "wild-type" strain, i.e. of the model with no genetic modifications.<br...")
- 18:14, 29 November 2012 (diff | hist) . . (+35) . . HowTos:OptFlux3